Man pages for Bioconductor-mirror/iCheck
QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data

boxPlotsDraw parallel plots for top results in whole-genome-wide...
densityPlotsDraw estimated density plots for all arrays
genExprSetGenerate an ExpressionSet object
genSimData.BayesNormalGenerating simulated data set from conditional normal...
getPCAFuncGet principal components of arrays
glmWrapperPerform glm test for all gene probes
lkhrWrapperPerform glm test for all gene probes
lmFitPairedA wrapper function for the function 'lmFit' of the R...
lmFitWrapperA wrapper function for the function 'lmFit' of the R...
LumiBatch2TableOutput slots (exprs, pData, fData) of an LumiBatch object...
pca2DPlotScatter plot of first 2 principal components
pca3DPlotScatter plot of 3 specified principal components
plotCurvesPlot trajectories of probe profiles across arrays
plotQCCurvesPlot trajectories of specific QC probes (e.g., biotin,...
plotSamplep95p05Plot trajectories of the ratio of 95th percentile to 5th...
quantilePlotPlot trajectories of quantiles across arrays
R2PlotFuncDraw heatmap of square of correlations among arrays
scatterPlotsDraw scatter plots for top results in whole-genome-wide...
sortExpressionSetSort the order of samples for an ExpressionSet object
Bioconductor-mirror/iCheck documentation built on June 1, 2017, 10:43 a.m.