API for Bioconductor-mirror/isomiRs
Analyze isomiRs and miRNAs from small RNA-seq

Global functions
IsoCountsFromMatrix Source code
IsomirDataSeq Man page Source code
IsomirDataSeq-class Man page
IsomirDataSeqFromFiles Man page Source code
LQNO Man page Source code
R2PermutationVector Source code
R2RefinedPermutationVector Source code
apply_median Source code
change_seq Source code
clean_low_rate_changes Source code
cluster_exp Source code
collapse_mirs Source code
convert_to_new_version Source code
cor_matrix Source code
counts Man page Man page
counts,IsomirDataSeq-method Man page Man page
counts.IsomirDataSeq Man page Source code
counts<-,IsomirDataSeq,matrix-method Man page
dLQNO Man page Source code
design Man page Man page
design,IsomirDataSeq-method Man page
design.IsomirDataSeq Source code
design<-,IsomirDataSeq,formula-method Man page
filter_by_cov Source code
filter_table Source code
find_targets Man page Source code
from_pairs_to_matrix Source code
gene_ex_rse Man page
isoCorrect Man page Source code
isoCounts Man page Source code
isoDE Man page Source code
isoNetwork Man page Source code
isoNorm Man page Source code
isoPLSDA Man page Source code
isoPLSDAplot Man page Source code
isoPlot Man page Source code
isoPlotNet Man page Source code
isoPlotPosition Man page Source code
isoSelect Man page
isoSelect,IsomirDataSeq-method Man page Man page
isoSelect.IsomirDataSeq Man page Source code
isoTop Man page Source code
ma_ex Man page
median_by_group Source code
mirData Man page
mirTritation Man page
mirna_ex_rse Man page
no_na Source code
pLQNO Man page Source code
plot_all_iso Source code
plot_profiles Source code
put_header Source code
qLQNO Man page Source code
rLQNO Man page Source code
reduce_mirna Source code
run_enricher Source code
scale Source code
somir_general_type Source code
somir_position Source code
subs_position Source code
summary_mirna Source code
viz_mirna_gene_enrichment Source code
Bioconductor-mirror/isomiRs documentation built on July 28, 2017, 5:22 a.m.