isoPlotPosition: Plot nucleotides changes at a given position

Description Usage Arguments Details Value Examples

View source: R/isomiRs.R

Description

This function plot different isomiRs proportion for each sample at a given position focused on the nucleotide change that happens there.

Usage

1
isoPlotPosition(ids, position = 1, column = "condition")

Arguments

ids

object of class IsomirDataSeq

position

integer indicating the position to show

column

string indicating the column in colData to color samples.

Details

It shows the nucleotides changes at the given position for each sample in each group. The color indicates the sample group. The size of the point is proportional to the number of total counts of isomiRs with changes. The position at y is the number of different sequences supporting the change.

Value

ggplot object showing nucleotide changes at a given position.

Examples

1
2
data(mirData)
isoPlotPosition(mirData, column="group")

Bioconductor-mirror/isomiRs documentation built on July 28, 2017, 5:22 a.m.