getDefaultPlotParams: getDefaultParameters

Description Usage Arguments Details Value See Also Examples

View source: R/getDefaultPlotParams.R

Description

Returns the default parameters for the given plot.type

Usage

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Arguments

plot.type

(integer) the required plot type. can be any valid plot type (see plotKaryotype)

Details

Given a plot.type, this function returns a list suitable as a valid plot.params object. The user can then proceed to change the parameter values as needed and supply the modified list to the plotKaryotype function.#'

Value

A valid plot.params object with the default values for the plotting parameters and ready to be used in the plotKaryotype

See Also

plotKaryotype

Examples

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pp <- getDefaultPlotParams(plot.type=2)
pp

#Change the ideogramheight param to create thicker ideograms 
pp$ideogramheight <- 150

plotKaryotype(genome="hg19", plot.type=2, plot.params=pp) 

 

Bioconductor-mirror/karyoploteR documentation built on July 4, 2017, 6:39 p.m.