The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio (GenomeStudio) data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level. It also includes the functions of processing Illumina methylation microarrays, especially Illumina Infinium methylation microarrays.
|Author||Pan Du, Richard Bourgon, Gang Feng, Simon Lin|
|Bioconductor views||DNAMethylation Microarray OneChannel Preprocessing QualityControl TwoChannel|
|Maintainer||Pan Du <[email protected]>, Lei Huang <[email protected]>, Gang Feng <[email protected]>|
|License||LGPL (>= 2)|
|Package repository||View on GitHub|
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