Bioconductor-mirror/meshes: MeSH Enrichment and Semantic analyses
Version 1.3.0

MeSH (Medical Subject Headings) is the NLM controlled vocabulary used to manually index articles for MEDLINE/PubMed. MeSH terms were associated by Entrez Gene ID by three methods, gendoo, gene2pubmed and RBBH. This association is fundamental for enrichment and semantic analyses. meshes supports enrichment analysis (over-representation and gene set enrichment analysis) of gene list or whole expression profile. The semantic comparisons of MeSH terms provide quantitative ways to compute similarities between genes and gene groups. meshes implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively and supports more than 70 species.

Getting started

Package details

Bioconductor views Annotation Clustering MultipleComparison Software
Maintainer
LicenseArtistic-2.0
Version1.3.0
URL https://guangchuangyu.github.io/meshes
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/meshes")
Bioconductor-mirror/meshes documentation built on July 21, 2017, 11:44 a.m.