Bioconductor-mirror/metagene: A package to produce metagene plots

This package produces metagene plots to compare the behavior of DNA-interacting proteins at selected groups of genes/features. Bam files are used to increase the resolution. Multiple combination of group of bam files and/or group of genomic regions can be compared in a single analysis. Bootstraping analysis is used to compare the groups and locate regions with statistically different enrichment profiles.

Getting started

Package details

AuthorCharles Joly Beauparlant <[email protected]>, Fabien Claude Lamaze <[email protected]>, Rawane Samb <[email protected]>, Astrid Louise Deschenes <[email protected]> and Arnaud Droit <[email protected]>.
Bioconductor views Alignment ChIPSeq Coverage Genetics MultipleComparison Sequencing
MaintainerCharles Joly Beauparlant <[email protected]>
LicenseArtistic-2.0 | file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Bioconductor-mirror/metagene documentation built on June 1, 2017, 11:48 a.m.