Files in Bioconductor-mirror/metagenomeFeatures
Exploration of marker-gene sequence taxonomic annotations

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/aggregate_taxa.R R/demoMgDb.R R/mgDb-class.R R/mgDb-taxa_accessors.R R/mgDb_method_annotateFeatures.R R/mgDb_method_annotateMRexp.R R/mgDb_method_select.R R/mgFeatures-class.R R/mgQuery.R R/mockMgDb.R R/mock_mgF.R R/mock_query_df.R R/phylo-class.R R/utils.R R/vignette_data.R README.md
appveyor.yml
data/mgQuery.rdata
data/mock_mgF.RData
data/mock_query_df.rdata
inst/extdata/6692_analysis_dt-16S_r-1_c-3.biom
inst/extdata/demoSeq.fasta.gz
inst/extdata/demoTaxa.sqlite
inst/extdata/genus_keys.RData
inst/extdata/gg_rep_genus_df.csv
inst/extdata/mockSeq.fasta.gz
inst/extdata/mockTaxa.sqlite
inst/extdata/mockTree.rds
inst/extdata/mockTree.tree
inst/extdata/mock_MgDb_seq.fasta.gz
inst/extdata/mock_MgDb_taxa.sqlite
inst/extdata/mock_counts.csv
inst/extdata/mock_sample_data.csv
inst/extdata/msd16s_MgDb_tree.rds
inst/scripts/make_mockMgDb.R inst/scripts/make_mock_mgF.R inst/scripts/make_mock_query_df.R inst/scripts/make_testMgAnno.R inst/scripts/make_testMgDb.R man/MgDb-class.Rd man/aggregate_taxa.Rd man/annotateFeatures-MgDb-method.Rd man/annotateMRexp_fData-MgDb-method.Rd man/get_demoMgDb.Rd man/get_mockMgDb.Rd man/mgF_meta.Rd man/mgF_seq.Rd man/mgF_taxa.Rd man/mgF_tree.Rd man/mgFeatures-class.Rd man/mgQuery.Rd man/mgdb_meta.Rd man/mgdb_seq.Rd man/mgdb_taxa.Rd man/mgdb_tree.Rd man/mock_mgF.Rd man/mock_query_df.Rd man/reexports.Rd man/select-MgDb-method.Rd man/show-MgDb-method.Rd man/taxa_columns.Rd man/taxa_keys.Rd man/taxa_keytypes.Rd man/taxa_levels.Rd
metagenomeFeatures.Rproj
tests/testMgAnno.rds
tests/testSeq.fasta.gz
tests/testTaxa.sqlite3
tests/test_seq.rds
tests/test_taxa.sqlite3
tests/test_tree.rds
tests/testthat.R
tests/testthat/cache/.gitignore
tests/testthat/cache/MgDb_test_annotate.rds
tests/testthat/cache/MgDb_test_annotateMRexp.rds
tests/testthat/cache/MgDb_test_select_both.rds
tests/testthat/cache/MgDb_test_select_seq.rds
tests/testthat/cache/MgDb_test_select_taxa.rds
tests/testthat/cache/MgDb_test_taxa_columns.rds
tests/testthat/cache/MgDb_test_taxa_keys_Class.rds
tests/testthat/cache/MgDb_test_taxa_keys_Family.rds
tests/testthat/cache/MgDb_test_taxa_keys_Genus.rds
tests/testthat/cache/MgDb_test_taxa_keys_Kingdom.rds
tests/testthat/cache/MgDb_test_taxa_keys_Kingdom_Species.rds
tests/testthat/cache/MgDb_test_taxa_keys_Order.rds
tests/testthat/cache/MgDb_test_taxa_keys_Phylum.rds
tests/testthat/cache/MgDb_test_taxa_keys_Species.rds
tests/testthat/cache/MgDb_test_taxa_keytypes.rds
tests/testthat/cache/metagenomeAnnotation_split_by_Class.rds
tests/testthat/cache/metagenomeAnnotation_split_by_Family.rds
tests/testthat/cache/metagenomeAnnotation_split_by_Genus.rds
tests/testthat/cache/metagenomeAnnotation_split_by_Kingdom.rds
tests/testthat/cache/metagenomeAnnotation_split_by_Order.rds
tests/testthat/cache/metagenomeAnnotation_split_by_Phylum.rds
tests/testthat/cache/metagenomeAnnotation_split_by_Species.rds
tests/testthat/helper-MRexp.R tests/testthat/helper-MgDb.R tests/testthat/test_MRexp_anno.R tests/testthat/test_agg_tax.R tests/testthat/test_mdDb-annotateFeatures.R tests/testthat/test_metagenomeAnnotation-class.R tests/testthat/test_mgDb-class.R tests/testthat/test_mgDb-select.R tests/testthat/test_mgFeatures-class.R tests/testthat/test_vignette_data.R vignettes/Example_16S_Annotation_Workflow.Rmd vignettes/Exploring_a_MgDb.Rmd
Bioconductor-mirror/metagenomeFeatures documentation built on June 23, 2017, 5:25 p.m.