Man pages for Bioconductor-mirror/metagenomeFeatures
Exploration of marker-gene sequence taxonomic annotations

aggregate_taxaAggregates a MRexperiment object and returns either an...
annotateFeatures-MgDb-methodAnnotating metagenome data with taxonomic information
annotateMRexp_fData-MgDb-methodAnnotate MRexperiment object featureData slot using MgDb...
get_demoMgDbExample MgDb-class object
get_mockMgDbMock MgDb-class object
MgDb-classMetagenome Database class
mgdb_metaMgDb metadata slot accessor
mgdb_seqMgDb seq slot accessor
mgdb_taxaMgDb taxa slot accessor
mgdb_treeMgDb tree slot accessor
mgFeatures-classmgFeature-class object
mgF_metamgFeatures metadata slot accessor
mgF_seqmgFeatures refDbSeq slot accessor
mgF_taxamgFeatures taxa slot accessor
mgF_treemgFeatures refDbTree slot accessor
mgQueryExample ShortRead 16S experiment dataset
mock_mgFExample mgFeatures class object
mock_query_dfExample Query Data Frame
reexportsObjects exported from other packages
select-MgDb-methodQuerying MgDb objects
show-MgDb-methodDisplay summary of MgDb-class object
taxa_columnsColumn names for MgDb taxonomy slot object
taxa_keysTaxonomy values for a given keytype
taxa_keytypesColumn names for MgDb taxonomy slot object
taxa_levelsAccessor function for taxonomic levels in MRexperiment...
Bioconductor-mirror/metagenomeFeatures documentation built on June 23, 2017, 5:25 p.m.