API for Bioconductor-mirror/methyAnalysis
DNA methylation data analysis and visualization

Global functions
MethyGenoSet Man page Source code
MethyGenoSet-class Man page
MethyLumiM2GenoSet Man page Source code
[,MethyGenoSet,ANY,ANY,ANY-method Man page
[,MethyGenoSet-method Man page
annotateDMRInfo Man page Source code
annotateGRanges Man page Source code
asBigMatrix Man page
asBigMatrix,GenoSet-method Man page
asBigMatrix-methods Man page
buildAnnotationTracks Man page Source code
checkChrName Man page Source code
class:MethyGenoSet Man page
coerce,GenoSet,MethyGenoSet-method Man page
coerce,MethyGenoSet,MethyLumiM-method Man page
coerce,MethyLumiM,MethyGenoSet-method Man page
combine,MethyGenoSet,MethyGenoSet-method Man page
createTranscriptTrack Man page Source code
dentifySigProbe Source code
detectDMR.slideWin Man page Source code
detection,MethyGenoSet-method Man page
detection<-,MethyGenoSet,ANY-method Man page
detection<-,MethyGenoSet-method Man page
estimateCMR.methylation Man page Source code
estimateMethySeq Man page Source code
estimateTrackHeight Source code
estimateTxOrder Source code
exampleMethyGenoSet Man page
export.DMRInfo Man page Source code
export.methyGenoSet Man page Source code
exprs,MethyGenoSet-method Man page
exprs<-,MethyGenoSet,ANY-method Man page
exprs<-,MethyGenoSet-method Man page
filterBisulfiteVariant Man page Source code
getContinuousRegion Man page Source code
getCoverage Man page Source code
getCpGIsland.ucsc Source code
getCytoBand.ucsc Source code
getEntrezAnnotation Source code
getHistory,MethyGenoSet-method Man page
getMethyProbeLocation Source code
heatmapByChromosome Man page Source code
identifyCpG Man page Source code
identifySigDMR Man page Source code
initialize,MethyGenoSet-method Man page
methylated,MethyGenoSet-method Man page
methylated<-,MethyGenoSet,ANY-method Man page
methylated<-,MethyGenoSet-method Man page
plotHeatmapByGene Man page Source code
plotMethylationHeatmapByGene Man page Source code
plotTracksWithDataTrackInfo Man page Source code
probe2gene Source code
setupSlidingTests Source code
smoothMethyData Man page Source code
transcriptDb2GeneRegionTrackByGene Source code
unmethylated,MethyGenoSet-method Man page
unmethylated<-,MethyGenoSet,ANY-method Man page
unmethylated<-,MethyGenoSet-method Man page
updateMethyGenoSet Man page Source code
Bioconductor-mirror/methyAnalysis documentation built on July 1, 2017, 7:38 a.m.