detect different methylation level (DMR)

calcFactornew | Normalization factor. |

calculatecount | Call C programs to R. |

calculatecount1 | Call C programs to R. |

calculatecountneg | Call C programs to R. |

CNVnormal | Normalize copy number variation (CNV). |

countcpgbin | Compute the total CpG number of each bin with each CpG site. |

countMeDIPbin | Compute the total MeDIP-seq number of each bin. |

countMREbin | Compute the total MRE-seq number of each bin. |

countMREcpgbin | Compute the MRE CpG number of each bin with MRE CpG sites. |

cpgcount | Call C programs to R. |

MnM-package | MeDIP-Seq and MRE-Seq data analysis |

MnM.qvalue | Estimate the q-values for a given set of p-values |

MnM.selectDMR | Select significants of each comparation. |

MnM.test | Compute p-value of each bin. |

normpdf | Compute p-value with normal distribution. |

normpdf1 | Compute p-value with normal distribution. |

pmultinom | Call C programs to R. |

qvalue.rank | Rank values. |

removeblacklist | Remove blacklist. |

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