Man pages for Bioconductor-mirror/missMethyl
Analysing Illumina HumanMethylation BeadChip Data

contrasts.varFitCompute contrasts for a varFit object.
densityByProbeTypePlot the beta value distributions of the Infinium I and II...
getINCsExtract intensity data for 613 Illumina negative controls...
getLeveneResidualsObtain Levene residuals
getMappedEntrezIDsGet mapped Entrez Gene IDs from CpG probe names
gomethGene ontology testing for Ilumina methylation array data
gsamethGeneralised gene set testing for Illumina's methylation array...
missMethyl-packageIntroduction to the missMethyl package
RUVadjAdjust estimated variances
RUVfitRemove unwanted variation when testing for differential...
SWANSubset-quantile Within Array Normalisation for Illumina...
topGSAGet table of top 20 enriched pathways
topRUVTable of top-ranked differentially methylated CpGs obatained...
topVarTable of top-ranked differentially variable CpGs
varFitTesting for differential variability
Bioconductor-mirror/missMethyl documentation built on June 1, 2017, 12:44 p.m.