Bioconductor-mirror/mitoODE: Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

The package contains the methods to fit a cell-cycle model on cell count data and the code to reproduce the results shown in our paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay" by Pau, G., Walter, T., Neumann, B., Heriche, J.-K., Ellenberg, J., & Huber, W., BMC Bioinformatics (2013), 14(1), 308. doi:10.1186/1471-2105-14-308

Getting started

Package details

AuthorGregoire Pau
Bioconductor views CellBasedAssays ExperimentData Preprocessing TimeCourse
MaintainerGregoire Pau <[email protected]>
LicenseLGPL
Version1.15.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/mitoODE")
Bioconductor-mirror/mitoODE documentation built on June 1, 2017, 12:45 p.m.