Man pages for Bioconductor-mirror/msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

assessPuritySingleAssess the purity of a single LC-MS/MS or DI-MS/MS file
averageSpectra-purityD-methodUsing purityD object, calculates to average mz, intensity and...
averageSpectraSingleCalculates to average mz, intensity and signal-to-noise of...
dimsPredictPurity-purityD-methodUsing purityD object, assess anticipated purity from a DI-MS...
dimsPredictPuritySinglePredict the precursor purity from a DI-MS dataset
filterp-purityD-methodFilter out peaks based on intensity and RSD criteria
frag4feature-purityA-methodAssign precursor purity scored fragmentation spectra to XCMS...
GetfilesGet files for DI-MS processing
getP-purityD-methodGet peaklist for a purityD object
groupPeaksExGroup peaklists from a list of dataframes
groupPeaks-purityD-methodUsing purityD object, group multiple peaklists by similar mz...
initialize-purityD-methodConstructor for S4 class to represent a DI-MS purityD
pcalcPerform purity calculation on a peak matrix
purityAAssess the purity of multiple LC-MS/MS or DI-MS/MS files...
purityD-classAn S4 class to represent a DI-MS purityD
purityXAssessing anticipated purity of XCMS features from an LC-MS...
show-purityA-methodShow method for purityA class
show-purityD-methodShow method for purityD
show-purityX-methodShow method for purityX
spectral_matchingSpectral matching
subtractMZSubtract MZ values based on ppm tolerance and noise ratio
subtract-purityD-methodUsing Subtract MZ values based on ppm tolerance and noise...
validate-purityA-methodValidate precursor purity predictions using LC-MS and...
writeOut-purityD-methodUsing purityD object, save peaks as text files
Bioconductor-mirror/msPurity documentation built on July 19, 2017, 8:46 a.m.