Bioconductor-mirror/neaGUI: An R package to perform the network enrichment analysis (NEA).
Version 1.10.0

neaGUI is an easy to use R package developed to perform the network enrichment analysis (NEA) proposed by Alexeyenko et al. (2012). The NEA method extends the overlap statistics in GSEA to network links between genes in the experimental set and those in the functional categories by exploiting biological information in terms of gene interaction network. The neaGUI requires the following R packages: tcltk, KEGG.db, GO.db, reactome.db, org.Hs.eg.db, AnnotationDbi, and hwriter.

Getting started

Package details

AuthorSetia Pramana, Woojoo Lee, Yudi Pawitan
Bioconductor views DifferentialExpression GO GUI GeneSetEnrichment KEGG Microarray Network NetworkEnrichment Pathways Reactome
MaintainerSetia Pramana <[email protected]>
LicenseGPL-2
Version1.10.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/neaGUI")
Bioconductor-mirror/neaGUI documentation built on June 1, 2017, 12:49 p.m.