neaGUI is an easy to use R package developed to perform the network enrichment analysis (NEA) proposed by Alexeyenko et al. (2012). The NEA method extends the overlap statistics in GSEA to network links between genes in the experimental set and those in the functional categories by exploiting biological information in terms of gene interaction network. The neaGUI requires the following R packages: tcltk, KEGG.db, GO.db, reactome.db, org.Hs.eg.db, AnnotationDbi, and hwriter.
|Author||Setia Pramana, Woojoo Lee, Yudi Pawitan|
|Bioconductor views||DifferentialExpression GO GUI GeneSetEnrichment KEGG Microarray Network NetworkEnrichment Pathways Reactome|
|Maintainer||Setia Pramana <[email protected]>|
|Package repository||View on GitHub|
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