A model for network-based prioritisation of genes

bandwidth | bandwidth |

cmn | Class Mass Normalization (CMN) from Zhu et al., 2003 |

conjugate_gradient | Conjugate Gradient Solver |

cuthill_mckee | Cuthill McKee (CM) algorithm |

fit-methods | Fit 'netprioR' model |

laplacian | Graph Laplacian |

learn | Fit netprioR model |

netprioR-class | netprioR |

netprioR-package | Package: netprioR |

norm_kern | Normalise kernel |

plot.netprioR | Plot method for 'netprioR' objects |

ranks-methods | Retrieve ranked prioritisation list |

ROC-methods | Compute ROC curve from netprioR model and true labels |

simulate_labels | Simulate labels |

simulate_network_random | Simulate random networks with predefined number of members... |

simulate_network_scalefree | Simulate scalefree networks |

simulate_phenotype | Simulate phenotypes correlated to labels pivoted into two... |

simulation | Example data: Simulated networks, phenotypes and labels for N... |

weights-methods | Retrieve network weights |

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