getBaseProfile: Compute and plot nucleotide profile.

Description Usage Arguments Value

View source: R/utils-general.R

Description

Computes and, optionally, lots nucleotide profile, describing the sequence effect on intensities.

Usage

1
getBaseProfile(coefs, probeLength = 25, plot = FALSE, ...)

Arguments

coefs

affinity spline coefficients.

probeLength

length of probes

plot

logical. Plots profile?

...

arguments to be passed to matplot.

Value

Invisibly returns a matrix with estimated effects.


Bioconductor-mirror/oligo documentation built on July 28, 2017, 5:23 a.m.