API for Bioconductor-mirror/oneChannelGUI
A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops

Global functions
.annotation Man page
.myfindOverlaps Man page
.myrk Man page
AboutaffylmGUI Man page
AboutextendedaffylmGUI Man page
AptMidas Man page
ComputeContrasts Man page Source code
ComputeLinearModelFit Man page Source code
DESeqInterface Man page
EDANtFreq Man page
EDAbetweenLane Man page
EDAbiasPlot Man page
EDAboxplot Man page
EDAplotQuality Man page
EDAreadNumber Man page
EDAwithinLane Man page
EG2probeset Man page
ExportNormalizedExpressionValues Man page Source code
ExportNormalizedExpressionValues1 Man page Source code
ExportfeatureNames Man page Source code
GOenrichment Man page
GOstatsHelp Man page Source code
GetNormalizationMethod Man page Source code
IPAlistFilter Man page
ML.edesign Man page
NGSreformat Man page
NewLimmaFile Man page Source code
NewLimmaFileNGS Man page Source code
NormalizeNow Man page Source code
OpenAFile Man page Source code Source code Source code
OpenAGeoFile Man page Source code
OpenALimmaFile Man page Source code
OpenBeadStudioFiles Man page
OpenCDFandTargetsfiles Man page Source code
OpenExonFile Man page Source code
OpenExonProbeFile Man page Source code
OpenExonandTargetsfiles Man page Source code
OpenGeoFile Man page Source code
OpenGeoFiles Man page
OpenLargeFile Man page Source code
OpenLargefiles Man page
OpenLimmaFile Man page Source code
OpenNgsfiles Man page
OpenmRNABam Man page
OpenmiRBam Man page
OpenmiRExpress Man page
OpenmiRProfiles Man page
OpenmiRShrimp Man page
OpenmiRanalyserfiles Man page
PlotOptionsv1 Man page Source code
RankProdHelp Man page Source code
Reads2logos Man page
RmiRInterface Man page
SaveAsLimmaFile Man page Source code
SaveDESeq2TopTable Source code
SaveLimmaFile Man page Source code
SaveMirPathTopTable Source code
SaveNGS1TopTable Source code
SaveNGS2TopTable Source code
SaveNGSGO Source code
SaveNGSTopTable Source code
SetED Man page Source code
VennDiagram Man page Source code
adaptorTrimm Man page
addAnnLib Man page
addga Man page Source code
affyPLMHelp Man page Source code
affyPlotMA Man page Source code
annotateNGSeset Man page Source code
aptFolder Man page
bayseqInterface Man page
biomartFilter Man page
bofa Man page
bowtieBuilt Man page
bowtieDownload Man page
bowtieGenomes Man page
buildingLocalAnnotation Man page
cdsDiff Man page Source code
changeMenu Man page
changes Man page
chimeraseq Man page Source code
chooseEDir Man page Source code
chooseInDir Man page Source code
chooseOutDir Man page Source code
chrLength Man page
closePdf Man page Source code
colExtract Man page
combineGeoMSF Man page
combining2eSet Man page
consistentFilters Man page
cosie Source code
cosieWrapper Man page Source code
countMature Source code
createDir Man page Source code
createGeoTarget Man page
crosshybFilter Man page Source code
ctrtrtHeatmap Man page
cuffdiff Man page Source code
cufflinks Man page Source code
cuffmerge Man page Source code
dabgFilter Man page
delete.ML Man page
deleteLocalData Man page
delta.plot1 Source code
desCounts Man page Source code
desGenes Man page Source code
deseq2Processing Man page Source code
dexCounts Man page Source code
dexExons Man page Source code
dfMAplot Man page
downloadMirbase Source code
downloadShrimp Man page Source code
eSet4meV Man page
edgeRNorm Man page
edgerInterface Man page
enrich Man page Source code
erankProdAltSpl Man page
erankProdAltSplFilter Man page Source code
exonContrasts Man page
exonScaffold Man page
exonTopTableExtract Man page
exonsSpecific2as Man page
exportFASTA Man page
extPckInfo Man page
extractAffyids Man page
extractmirTargets Man page
fastQC Man page
filteringTable Man page
filteringmiRtargets Man page
fromNGStoDf Source code
fusionNS Man page Source code
fusionfilter Man page Source code
fusionpeptides Man page Source code
geneDiff Man page Source code
geneExonLibs Man page
genefilterHelp Man page Source code
genomePlot Man page
genomeStudioReformat Man page Source code
geoVSbioc Man page
getNGSannotation Man page
gettingEG Source code
gettingOneEG Source code
goseqInterface Man page
hsfa Man page
importfusions Man page Source code
initialize.extAffylmGUI Man page
inspecting.one.splice.index Man page
inspecting.splice.index Man page
intensityFilter Man page
intronicBg Man page
iqrFilter Man page
isoDiff Man page Source code
javaFolder Man page
largedatasetNorm Man page
length.stat Source code
libraryFilesDir Man page
limma2paired Man page
limmaExons Man page
listFilter Man page
loadmirnapath Man page Source code
log2Conversion Man page
mRNAbowtieRun Man page
mRNAmiRCor Man page
maSigProHelp Man page Source code
makeBED15 Man page
makeDb.R Source code
makeGCcontent Man page
makeGeneScaffold Man page
makeSam Man page Source code
maligReads Source code
mapPSR Source code
mapping2RefSeq Man page
mapping2ensembl Man page
mapping2exon Man page
mappingPSR Source code
masigpro Man page
masigpro.edesign Man page
masigpro.view Man page
matureOnHairpin Source code
meVDownload Man page
metaArrayIC Man page Source code
metaArrayMerge Man page Source code
miRNAbowtieRun Man page
miRNAde Man page Source code
midasFilter Man page
mirPath Man page Source code
mirnaTable Man page Source code
mmfa Man page
myExpresso Man page
myfindOverlaps Source code Source code
myrk Source code
ncHs.data Man page
ncMm.data Man page
ncRn.data Man page
ncScaffold Man page
ngsperlDownload Man page
normBoxplot Man page
nternalLoop Source code
ocPlotHist Man page
ocPlotPCA Man page
onAttach Source code Source code
oneChannelGUI Man page
oneChannelGUI-package Man page
oneChannelGUI.start Man page
oneChannelGUIHelp Man page Man page Source code
openPdf Man page Source code
openmiRNAFile Source code
pamr.confusion.mod Source code
pamrHelp Man page Source code
pdmclassHelp Man page Source code
peaksDetector Source code
perm.pamr Source code
perm.pdmclass Source code
permuting Man page Source code
plierToZero Man page
plotDE.exons Man page Source code
plotDensity Source code
plotGO Man page Source code
plotVariantSI Man page
plotcoverage Man page Source code
preProcessingNGS Source code
qcMDS Man page
rankProd Man page
rankingConversion Man page
rawBoxplotPN Man page
rawpCheck Man page
reading.log Source code
recoverUnfiltered Man page
refiningPeaks Man page
reformatGdl Man page
refseqDownload Man page
resize Source code
retrieveMirTargets Man page
retrievePSRseq Man page
retrievePSRseq1gid Man page
reviqrFilter Man page
rnfa Man page
runEnrichment Man page Source code
runningJetta Man page Source code
sample.size.evaluation Man page
sample.size.evaluation1 Man page
saveFiltered Source code
setBinDir Man page Source code
showDataset Man page
showTopTable Man page Source code
shrimp Source code
siggenes Man page
siggenesHelp Man page Source code
simFilter Man page Source code
sizepowerHelp Man page Source code
spliceIndex Man page
ssizeHelp Man page Source code
standAloneAddingAnnotation Man page
standAloneBuildingLocalAnnotation Man page
startmeV Man page
targetWidget Man page
templA Man page Source code
topTable.exons Man page Source code
topTable.genes Man page Source code
tophat Man page Source code
tophatrun Man page Source code
trainTest Man page
trim Source code
tuxedoMenu Man page Source code
tuxedoSetup Man page Source code
unionReads Source code
updateLibs Man page
variantExons Man page
variantSI Man page
whichKindOfArray Man page
wrapNGS Man page
wrapScaffold Man page
wrapperMirnaCounts Man page Source code
Bioconductor-mirror/oneChannelGUI documentation built on July 28, 2017, 5:23 a.m.