Files in Bioconductor-mirror/oneChannelGUI
A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops

DESCRIPTION
NAMESPACE
NEWS
R/.zzz.R R/RNAseq.R R/chimeraGUI.R R/classificationmenu.R R/dataminingmenu.R R/dexseq.R R/exonmenu.R R/filemenu.R R/filteringmenu.R R/generaltoolsmenu.R R/helpmenu.R R/initialize.extAffylmGUI.R R/modellingstatmenu.R R/normalizemenu.R R/oneChannelGUI.R R/oneChannelGUI.start.R R/permutationstatmenu.R R/qcmenu.R R/reformatmenu.R R/standalonefunctions.R R/targetmenu.R R/tuxedo.R R/zzz.R
data/bofa.rda
data/chrLength.rda
data/geoVSbioc.rda
data/hsfa.rda
data/mmfa.rda
data/ncHs.data.rda
data/ncMm.data.rda
data/ncRn.data.rda
data/rnfa.rda
inst/CITATION
inst/batch/batch_dexseq_exon.R
inst/etc/affylmGUI-menus.affy.txt
inst/etc/affylmGUI-menus.exon.txt
inst/etc/affylmGUI-menus.gene.txt
inst/etc/affylmGUI-menus.illumina.txt
inst/etc/affylmGUI-menus.large.datasets.txt
inst/etc/affylmGUI-menus.ngs.datasets.txt
inst/etc/localData.txt
inst/etc/netaffxUpdates.txt
inst/perl_scripts/Adapter_trimCRA.pl
inst/perl_scripts/MicroRazerSENSEMBL2genominator.hs.pl
inst/perl_scripts/README.txt
inst/perl_scripts/bta_precursor.fa
inst/perl_scripts/fastq_to_fasta.pl
inst/perl_scripts/hsa_precursor.fa
inst/perl_scripts/mmu_precursor.fa
inst/perl_scripts/rno_precursor.fa
inst/perl_scripts/shrimp2bed.mm.pl
inst/perl_scripts/shrimpENSEMBL2genominator.hs.pl
inst/perl_scripts/shrimpENSEMBL2genominator.mirbase.pl
inst/perl_scripts/shrimpENSEMBL2genominator.mm.pl
inst/perl_scripts/shrimpENSEMBL2genominator.nc.pl
man/AptMidas.Rd man/EDANtFreq.Rd man/EDAplotQuality.Rd man/EDAreadNumber.Rd man/EG2probeset.Rd man/GOenrichment.Rd man/IPAlistFilter.Rd man/ML.edesign.Rd man/NGSreformat.Rd man/OpenBeadStudioFiles.rd man/OpenLargefiles.Rd man/OpenmRNABam.Rd man/PlotOptionsv1.Rd man/Reads2logos.Rd man/RmiRInterface.Rd man/VennDiagram.Rd man/adaptorTrimm.Rd man/annotateNGSeset.Rd man/bayseqInterface.Rd man/biomartFilter.Rd man/bofa.Rd man/bowtieBuilt.Rd man/bowtieDownload.Rd man/bowtieGenomes.Rd man/buildingLocalAnnotation.Rd man/chrLength.Rd man/colExtract.Rd man/combineGeoMSF.Rd man/combining2eSet.Rd man/consistentFilters.Rd man/cosieWrapper.Rd man/createGeoTarget.Rd man/crosshybFilter.Rd man/ctrtrtHeatmap.Rd man/desGenes.Rd man/dexCounts.Rd man/dexExons.Rd man/dfMAplot.Rd man/eSet4meV.Rd man/edgeRNorm.Rd man/edgerInterface.Rd man/erankProdAltSpl.Rd man/erankProdAltSplFilterl.Rd man/exonContrasts.Rd man/exonScaffold.Rd man/exonTopTableExtract.Rd man/exonsSpecific2as.Rd man/extractAffyids.Rd man/extractmirTargets.Rd man/filteringTable.Rd man/filteringmiRtargets.Rd man/geneExonLibs.Rd man/genomePlot.Rd man/genomeStudioReformat.Rd man/geoVSbioc.Rd man/getNGSannotation.Rd man/hsfa.Rd man/inspecting.one.splice.index.Rd man/inspecting.splice.index.Rd man/intensityFilter.Rd man/iqrFilter.Rd man/limma2paired.Rd man/limmaExons.Rd man/listFilter.Rd man/mRNAbowtieRun.Rd man/mRNAmiRCor.Rd man/makeBED15.Rd man/makeGCcontent.Rd man/makeGeneScaffold.Rd man/makeSam.Rd man/mapping2RefSeq.Rd man/mapping2ensembl.Rd man/mapping2exon.Rd man/masigpro.Rd man/masigpro.edesign.Rd man/masigpro.view.Rd man/metaArrayIC.Rd man/metaArrayMerge.rd man/miRNAbowtieRun.Rd man/mmfa.Rd man/myExpresso.Rd man/ncHs.data.Rd man/ncMm.data.Rd man/ncRn.data.Rd man/ncScaffold.Rd man/normBoxplot.Rd man/ocPlotHist.Rd man/ocPlotPCA.Rd man/oneChannelGUI-package.Rd man/oneChannelGUI.Rd man/plierToZero.Rd man/plotGO.Rd man/plotVariantSI.Rd man/qcMDS.Rd man/rankProd.Rd man/rankingConversion.Rd man/rawBoxplotPN.Rd man/rawpCheck.Rd man/refiningPeaks.Rd man/reformatGdl.Rd man/refseqDownload.Rd man/retrieveMirTargets.Rd man/retrievePSRseq.Rd man/retrievePSRseq1gid.Rd man/reviqrFilter.Rd man/rnfa.Rd man/runningJetta.Rd man/sample.size.evaluation.Rd man/sample.size.evaluation1.Rd man/showDataset.Rd man/showTopTable.Rd man/siggenes.Rd man/simFilter.Rd man/spliceIndex.Rd man/standAloneAddingAnnotation.Rd man/standAloneBuildingLocalAnnotation.Rd man/targetWidget.Rd man/templA.Rd man/topTable.exons.Rd man/tophat.Rd man/trainTest.Rd man/tuxedoSetup.Rd man/updateLibs.Rd man/variantExons.Rd man/variantSI.Rd man/wrapNGS.Rd man/wrapScaffold.Rd
vignettes/Exon-level.analysis.Rnw
vignettes/RNAseq.Rnw
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vignettes/gene-level.analysis.Rnw
vignettes/inst1.png
vignettes/install.Rnw
vignettes/ngs0.png
vignettes/ngs1.png
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vignettes/ngs8.png
vignettes/ngs9.png
vignettes/standAloneFunctions.Rnw
Bioconductor-mirror/oneChannelGUI documentation built on July 28, 2017, 5:23 a.m.