This function calculates differential expression at exon level for an RNA-seq experiment.
This function uses DEXseq package to calculate differential expression at exon level starting from a set of counts files located in different folders and generated by dexCounts function. The target file is the one used to run tophat in oneChannelGUI. it executes in background a batch file that returns two rda object called res.exons and ecs that can be used for further analysis. res.exons is contains all results descirbing differential expression at exon level and ecs is the DEXseq object containg all info for the exons.
Raffaele A Calogero
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