MA and Volcano plots can be generated starting from limma results summarized in a topTable. Specific subsets of the topTable defined by p-value below an user-defined threshold and/or log2 fold changes over an user-defined threshold can be saved. The subset of data can be saved as a tab delimited file
topTable data.frame generate by affylmGUI
To know more about topTable see limma help
Raffaele A Calogero
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