Ontology traversal and search

getAccession | Returns accession of the ontology term |

getAllTermChildren | Returns all children of term of interest |

getAllTermChildrenById | Returns all children of term of interest |

getAllTermIds | Returns accessions of all ontology terms |

getAllTermParents | Returns set of all parents of the term of interest |

getAllTermParentsById | Returns set of all parents of the term of interest |

getAllTerms | Returns all ontology terms |

getEFO | Returns an instance of the EFO ontology parser |

getEFOBranchRootIds | Returns all term's parents |

getLabel | Returns label of the ontology term |

getOntology | Returns an instance of the ontology parser created from OWL... |

getOntologyAccession | Returns ontology accession |

getOntologyDescription | Returns ontology description |

getOntologyNoReasoning | Returns an instance of the ontology parser created from OWL... |

getOntologyRelationNames | Returns list of relations used in ontology |

getRootIds | Returns root terms of ontology |

getRoots | Returns root terms of ontology |

getTermAndAllChildren | Returns accessions of all term's parents and term itself |

getTermAndAllChildrenById | Returns accessions of all term's parents and term itself |

getTermById | Returns ontology term |

getTermChildren | Returns direct children of term of interest |

getTermChildrenById | Returns direct children of term of interest |

getTermDefinitions | Returns set of ontology term's definitions |

getTermDefinitionsById | Returns set of ontology term's definitions |

getTermNameById | Returns ontology term's label |

getTermParents | Returns set of direct parents of the term of interest |

getTermParentsById | Returns set of direct parents of the term of interest |

getTermRelationNames | Returns list of relation names available for the term |

getTermRelationNamesById | Returns list of relation names available for the term |

getTermRelations | Returns set of terms that are in defined relation with term... |

getTermRelationsById | Returns set of terms that are in defined relation with term... |

getTermSynonyms | Returns set of ontology term's synonyms |

getTermSynonymsById | Returns set of ontology term's synonyms |

hasTerm | Returns true if term is in ontology |

isEFOBranchRoot | Returns true if term is the branch root in EFO |

isEFOBranchRootById | Returns true if term is the branch root in EFO |

isRoot | Returns true if term is the root in the ontology hierarchy |

isRootById | Returns true if term is the root in the ontology hierarchy |

ontoCAT-package | The ontoCAT package provides a simple interface to the... |

Ontology-class | Class "Ontology" |

OntologyTerm-class | Class "OntologyTerm" |

searchTerm | Searches term by its name in ontology |

searchTermPrefix | Searches for term by prefix in ontology |

showHierarchyDownToTerm | Returns tree representation of term's parents |

showHierarchyDownToTermById | Returns tree representation of term's parents |

showPathsToTerm | Returns paths to the term |

showPathsToTermById | Returns paths to the term |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.