demo.paths includes pathway ids and optimal plotting parameters when calling pathview.
GSE16873 is a breast cancer study (Emery et al, 2009) downloaded from
Gene Expression Omnibus (GEO). Dataset gse16873 is pre-processed using FARMS
method and includes 6 patient cases,
each with HN (histologically normal) and DCIS (ductal carcinoma in situ)
RMA samples. The same dataset is also used in
package. Dataset gse16873.d includes the gene expression changes of two
pairs of DCIS vs HN samples.
paths.hsa includes the full list of human pathway ID/names from KEGG.
1 2 3
demo.paths is a named list with ids and plotting parameters for 3 pathways. For details do:
gse16873.d is a numeric matrix with over 10000 rows (genes) and 2
columns (samples). For details do:
paths.hsa is a named vector mapping KEGG pathway ID to human pathway names.
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