Bioconductor-mirror/pqsfinder: Identification of potential quadruplex forming sequences

The main functionality of this package is to detect DNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, this package is able to detect sequences responsible for G4s folded from imperfect G-runs containing bulges or mismatches and as such is more sensitive than competing algorithms.

Getting started

Package details

AuthorJiri Hon, Matej Lexa and Tomas Martinek
Bioconductor views GeneRegulation MotifDiscovery SequenceMatching
MaintainerJiri Hon <[email protected]>
LicenseBSD_2_clause + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Bioconductor-mirror/pqsfinder documentation built on June 23, 2017, 5:27 p.m.