API for Bioconductor-mirror/proFIA
Preprocessing of FIA-HRMS data

Global functions
AntiSymTriangle Source code
BWF Source code
EstimatesComputation Source code
KNNEuc Source code
NewtonRaphsonLike Source code
OverlapSplit Source code
SavGol Source code
acquisitionDirectory Man page Source code
analyzeAcquisitionFIA Man page Source code
binaryClosest Source code
calcAngle Source code
calcPvalue Source code
checkIso Source code
checkIsoValues Source code
colorKeys Source code
convolveNormalized Source code
cuttingPoint Source code
dataMatrix Man page
dataMatrix,proFIAset-method Man page
determiningInjectionZone Man page Source code
determiningSizePeak Man page
determiningSizePeak.Geom Man page Source code
estimateNoiseFile Source code
estimateNoiseMS Man page Source code
exportDataMatrix Man page
exportDataMatrix,proFIAset-method Man page
exportExpressionSet Man page
exportExpressionSet,proFIAset-method Man page
exportPeakTable Man page
exportPeakTable,proFIAset-method Man page
exportSampleMetadata Man page
exportSampleMetadata,proFIAset-method Man page
exportVariableMetadata Man page
exportVariableMetadata,proFIAset-method Man page
extendSize Source code
fastMatchPpm Source code
findBandsFIA Man page Source code
findEqualGreaterM Source code
findFIASignal Man page Source code
findLimDensity Source code
findLinesAboveNoise Source code
findMzGroup Man page
findMzGroup,proFIAset-method Man page
findPeaks Man page
findPeaksLimits Source code
fuseRange Source code
getInjectionPeak Man page Source code
getMidBins Source code
getRawName Source code
getUniqueIds Source code
group.FIA Man page
group.FIA,proFIAset-method Man page
groupMatrix Man page
groupMatrix,proFIAset-method Man page
impute.FIA Man page
impute.FIA,proFIAset-method Man page
impute.KNN_TN Man page
impute.KNN_TN,proFIAset-method Man page
impute.randomForest Man page
impute.randomForest,proFIAset-method Man page
imputeKNN Source code
injectionPeaks Man page
injectionPeaks,proFIAset-method Man page
interToRegress Source code
keysVariableMetadata Source code
layoutMatrix Source code
linearInterpolation Source code
makeBins Source code
makeDataMatrix Man page
makeDataMatrix,proFIAset-method Man page
makeSeparateColors Source code
makeSpaces Source code
matResiduals Source code
matResidualsLikehood Source code
matrix_effect Source code
medianFiltering Source code
mklhood Source code
movavg Source code
noiseEstimation-class Man page
openAndFindPeaks Source code
peaks Man page
peaks,proFIAset-method Man page
peaksGroup Man page
peaksGroup,proFIAset-method Man page
persoConv Source code
phenoClasses Man page
phenoClasses,proFIAset-method Man page
plot,proFIAset,ANY-method Man page
plot.FIA Man page
plotFlowgrams Man page
plotFlowgrams,proFIAset-method Man page
plotNoise Man page Source code
plotRaw Man page
plotRaw,proFIAset-method Man page
plotSamplePeaks Man page
plotSamplePeaks,proFIAset-method Man page
plotVoidRaw Source code
proFIA Man page
proFIA-package Man page
proFIAset Man page Source code
proFIAset-class Man page
putZero Source code
segmentCurve Source code
smooth.BWF Source code
smooth.SavGol Source code
switchSummaryPeak Source code
toVoid Source code
trapezArea Source code
triangleDistribution Source code
Bioconductor-mirror/proFIA documentation built on June 23, 2017, 6:18 p.m.