Bioconductor-mirror/psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Interactive R package with a Shiny-based graphical interface for the quantification, analysis and visualisation of alternative splicing data from The Cancer Genome Atlas (TCGA) or the Genotype-Tissue Expression (GTEx) project. This tool interactively performs survival, principal components and differential splicing analyses with direct incorporation of clinical features (such as tumour stage or survival) associated with TCGA and GTEx samples.

Getting started

Package details

Bioconductor views AlternativeSplicing BiomedicalInformatics DifferentialSplicing GUI MultipleComparison PrincipalComponent RNASeq Sequencing Survival Transcription Transcriptomics Visualization
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Bioconductor-mirror/psichomics documentation built on June 1, 2017, 2:56 p.m.