Bioconductor-mirror/rgsepd: Gene Set Enrichment / Projection Displays

R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at RefSeq IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.

Getting started

Package details

AuthorKarl Stamm
Bioconductor views DifferentialExpression GeneSetEnrichment RNASeq Software
MaintainerKarl Stamm <[email protected]>
LicenseGPL-3
Version1.9.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/rgsepd")
Bioconductor-mirror/rgsepd documentation built on June 1, 2017, 3:57 p.m.