Man pages for Bioconductor-mirror/riboSeqR
Analysis of sequencing data from ribosome profiling experiments

filterHitsFilters framecalled data based on the mean number of hits...
findCDSParses a transcriptome file looking for start/stop codons in...
frameCountingCounts aligned reads within coding sequence regions by frame...
frameShiftAnalyses frame called ribosome footprint data within coding...
lengthDistA function plotting the density of lengths in a riboData...
libScalesGenerates library scaling factors from ribosome footprint...
logoContextProduces a motif of coding start context
plotCDSPlots average ribosome footprint alignment to coding...
plotTranscriptPlots ribosome footprint abundance and mRNA coverage (if...
readRibodataReads ribosomal and (optionally) rna data from alignment...
riboCoding-classClass "riboCoding"
riboData-classClass "riboData"
riboSeqR-packageAnalysis of sequencing data from ribosome profiling...
rnaCountsExtracts mRNA counts from a riboDat object for a set of...
sliceCountsSlices out count data from riboCoding object for use in...
Bioconductor-mirror/riboSeqR documentation built on June 1, 2017, 3:58 p.m.