API for Bioconductor-mirror/roar
Identify differential APA usage from RNA-seq alignments

Global functions
RoarDataset Man page Source code
RoarDataset-class Man page
RoarDatasetFromFiles Man page Source code
RoarDatasetMultipleAPA Man page Source code
RoarDatasetMultipleAPA-class Man page
RoarDatasetMultipleAPAFromFiles Man page Source code
checkStep Man page Source code
combineFisherMethod Man page Source code
computePairedPvals Man page
computePairedPvals, RoarDataset Man page
computePairedPvals, RoarDatasetMultipleAPA Man page
computePairedPvals,RoarDataset,numeric,numeric-method Man page
computePairedPvals,RoarDatasetMultipleAPA,numeric,numeric-method Man page
computePvals Man page
computePvals, RoarDataset Man page
computePvals, RoarDatasetMultipleAPA Man page
computePvals,RoarDataset-method Man page
computePvals,RoarDatasetMultipleAPA-method Man page
computeRoars Man page
computeRoars, RoarDataset, numeric, numeric Man page
computeRoars, RoarDatasetMultipleAPA, numeric, numeric Man page
computeRoars,RoarDataset-method Man page
computeRoars,RoarDatasetMultipleAPA-method Man page
cores Man page
cores,RoarDataset-method Man page
cores,RoarDatasetMultipleAPA-method Man page
countPrePost Man page
countPrePost,RoarDataset,logical Man page
countPrePost,RoarDataset,logical-method Man page
countPrePost,RoarDataset-method Man page
countPrePost,RoarDatasetMultipleAPA Man page
countPrePost,RoarDatasetMultipleAPA,logical-method Man page
countPrePost,RoarDatasetMultipleAPA-method Man page
countResults Man page
countResults, RoarDataset Man page
countResults, RoarDatasetMultipleAPA Man page
countResults,RoarDataset-method Man page
countResults,RoarDatasetMultipleAPA-method Man page
createRoarMultipleBam Source code
createRoarSingleBam Source code
fpkmResults Man page
fpkmResults, RoarDataset Man page
fpkmResults, RoarDatasetMultipleAPA Man page
fpkmResults,RoarDataset-method Man page
fpkmResults,RoarDatasetMultipleAPA-method Man page
getApaGenesFractions Source code
getApaGenesFractionsMinusStrand Source code
getApaGenesFractionsPlusStrand Source code
getFisher Man page Source code
getPreCoordsSE Source code
meanAcrossAssays Man page Source code
obtainPrePost Source code
pvalueCorrectFilter Man page
pvalueCorrectFilter, RoarDataset Man page
pvalueCorrectFilter, RoarDatasetMultipleAPA Man page
pvalueCorrectFilter,RoarDataset,numeric,numeric,character-method Man page
pvalueCorrectFilter,RoarDatasetMultipleAPA,numeric,numeric,chara Man page
pvalueFilter Man page
pvalueFilter, RoarDataset Man page
pvalueFilter, RoarDatasetMultipleAPA Man page
pvalueFilter,RoarDataset,numeric,numeric-method Man page
pvalueFilter,RoarDatasetMultipleAPA,numeric,numeric-method Man page
roar Man page
roar-package Man page
standardFilter Man page Source code
standardFilter, RoarDataset Man page
standardFilter, RoarDatasetMultipleAPA Man page
standardFilter,RoarDataset,numeric-method Man page
standardFilter,RoarDatasetMultipleAPA,numeric-method Man page
sumFragmentCounts Source code
totalResults Man page
totalResults, RoarDataset Man page
totalResults, RoarDatasetMultipleAPA Man page
totalResults,RoarDataset-method Man page
totalResults,RoarDatasetMultipleAPA-method Man page
Bioconductor-mirror/roar documentation built on July 1, 2017, 7:41 a.m.