Files in Bioconductor-mirror/rtracklayer
R interface to genome browsers and their annotation tracks

DESCRIPTION
INSTALL
LICENSE
NAMESPACE
NEWS
R/bam.R R/bed.R R/bigWig.R R/browser.R R/chain.R R/compression.R R/fasta.R R/gff.R R/index.R R/io.R R/ncbi.R R/quickload.R R/ranges.R R/readGFF.R R/tabix.R R/test_rtracklayer_package.R R/trackDb.R R/trackTable.R R/twobit.R R/ucsc.R R/utils.R R/web.R R/wig.R R/zzz.R
TODO
configure
configure.ac
data/cpneTrack.rda
data/targets.rda
demo/00Index
demo/targets.R
inst/CITATION
inst/extdata/demo.narrowPeak.gz
inst/notes/design.org
inst/notes/requirements.tex
inst/notes/use-cases.tex
inst/scripts/cpneTrack.R inst/scripts/twobit.R
inst/tests/bed.bw
inst/tests/bed.wig
inst/tests/genes.gff3
inst/tests/gtf.gff
inst/tests/multi.wig
inst/tests/quickload/T_species_Oct_2011/T_species_Oct_2011.2bit
inst/tests/quickload/T_species_Oct_2011/annots.xml
inst/tests/quickload/T_species_Oct_2011/bedData.bed.gz
inst/tests/quickload/T_species_Oct_2011/bedData.bed.gz.tbi
inst/tests/quickload/T_species_Oct_2011/bedGraphData.bw
inst/tests/quickload/T_species_Oct_2011/mod_chromInfo.txt
inst/tests/quickload/contents.txt
inst/tests/step.wig
inst/tests/test.2bit
inst/tests/test.R
inst/tests/test.bed
inst/tests/test.bed15
inst/tests/test.bedGraph
inst/tests/test.bedpe
inst/tests/test.bw
inst/tests/test.gtf
inst/tests/test.xmfa
inst/tests/v1.gff
inst/tests/v2.gff
inst/tests/v3.gff
inst/tests/variableStep.bw
inst/tests/variableStep.wig
inst/unitTests/test_bed.R inst/unitTests/test_bedGraph.R inst/unitTests/test_bw.R inst/unitTests/test_gff.R inst/unitTests/test_twoBit.R inst/unitTests/test_wig.R load.R man/BEDFile-class.Rd man/BamFile-methods.Rd man/Bed15TrackLine-class.Rd man/BigWigFile.Rd man/BigWigSelection-class.Rd man/BrowserViewList-class.Rd man/Chain-class.Rd man/FastaFile-class.Rd man/GFFFile-class.Rd man/GRangesForUCSCGenome.Rd man/GenomicData.Rd man/GenomicSelection.Rd man/Quickload-class.Rd man/QuickloadGenome-class.Rd man/RTLFile-class.Rd man/RangesList-methods.Rd man/TabixFile-methods.Rd man/TrackDb-class.Rd man/TwoBitFile-class.Rd man/UCSCData-class.Rd man/UCSCFile-class.Rd man/UCSCSchema-class.Rd man/UCSCTableQuery-class.Rd man/WIGFile-class.Rd man/activeView-methods.Rd man/asBED.Rd man/asGFF.Rd man/basicTrackLine-class.Rd man/blocks-methods.Rd man/browseGenome.Rd man/browserSession-class.Rd man/browserSession-methods.Rd man/browserView-class.Rd man/browserView-methods.Rd man/browserViews-methods.Rd man/cpneTrack.Rd man/export.Rd man/genomeBrowsers.Rd man/laySequence-methods.Rd man/layTrack-methods.Rd man/liftOver.Rd man/readGFF.Rd man/targets.Rd man/tracks-methods.Rd man/ucscGenomes.Rd man/ucscSession-class.Rd man/ucscTrackLine-class.Rd man/ucscTrackModes-class.Rd man/ucscTrackModes-methods.Rd man/ucscView-class.Rd man/wigToBigWig.Rd man/wigTrackLine-class.Rd
src/IRanges_stubs.c
src/Makevars.common
src/Makevars.in
src/Makevars.win
src/R_init_rtracklayer.c
src/S4Vectors_stubs.c
src/XVector_stubs.c
src/bigWig.c
src/bigWig.h
src/chain_io.c
src/handlers.c
src/handlers.h
src/readGFF.c
src/readGFF.h
src/rtracklayer.h
src/twoBit.c
src/twoBit.h
src/ucsc/_cheapcgi.c
src/ucsc/_portimpl.c
src/ucsc/_portimpl.h
src/ucsc/bPlusTree.c
src/ucsc/bPlusTree.h
src/ucsc/base64.c
src/ucsc/base64.h
src/ucsc/bbiFile.h
src/ucsc/bbiRead.c
src/ucsc/bbiWrite.c
src/ucsc/bigBed.h
src/ucsc/bigWig.h
src/ucsc/bits.c
src/ucsc/bits.h
src/ucsc/bwgCreate.c
src/ucsc/bwgInternal.h
src/ucsc/bwgQuery.c
src/ucsc/cheapcgi.h
src/ucsc/cirTree.c
src/ucsc/cirTree.h
src/ucsc/common.c
src/ucsc/common.h
src/ucsc/dlist.c
src/ucsc/dlist.h
src/ucsc/dnaseq.c
src/ucsc/dnaseq.h
src/ucsc/dnautil.c
src/ucsc/dnautil.h
src/ucsc/dystring.c
src/ucsc/dystring.h
src/ucsc/errAbort.c
src/ucsc/errAbort.h
src/ucsc/errCatch.h
src/ucsc/hash.c
src/ucsc/hash.h
src/ucsc/hmmstats.c
src/ucsc/hmmstats.h
src/ucsc/htmshell.h
src/ucsc/https.c
src/ucsc/https.h
src/ucsc/internet.c
src/ucsc/internet.h
src/ucsc/linefile.c
src/ucsc/linefile.h
src/ucsc/localmem.c
src/ucsc/localmem.h
src/ucsc/memalloc.c
src/ucsc/memalloc.h
src/ucsc/net.c
src/ucsc/net.h
src/ucsc/obscure.c
src/ucsc/obscure.h
src/ucsc/options.h
src/ucsc/os.c
src/ucsc/osunix.c
src/ucsc/oswin9x.c
src/ucsc/pipeline.c
src/ucsc/pipeline.h
src/ucsc/portable.h
src/ucsc/portimpl.h
src/ucsc/rangeTree.c
src/ucsc/rangeTree.h
src/ucsc/rbTree.c
src/ucsc/rbTree.h
src/ucsc/sig.h
src/ucsc/sqlNum.c
src/ucsc/sqlNum.h
src/ucsc/twoBit.c
src/ucsc/twoBit.h
src/ucsc/udc.c
src/ucsc/udc.h
src/ucsc/verbose.c
src/ucsc/verbose.h
src/ucsc/wildcmp.c
src/ucsc/zlibFace.c
src/ucsc/zlibFace.h
src/utils.c
src/utils.h
tests/rtracklayer_unit_tests.R
vignettes/example.bed
vignettes/rtracklayer.Rnw
Bioconductor-mirror/rtracklayer documentation built on July 28, 2017, 5:27 a.m.