Man pages for Bioconductor-mirror/rtracklayer
R interface to genome browsers and their annotation tracks

activeView-methodsAccessing the active view
asBEDCoerce to BED structure
asGFFCoerce to GFF structure
BamFile-methodsExport to BAM Files
basicTrackLine-classClass "BasicTrackLine"
Bed15TrackLine-classClass "Bed15TrackLine"
BEDFile-classBEDFile objects
BigWigFileBigWig Import and Export
BigWigSelection-classSelection of ranges and columns
blocks-methodsGet blocks/exons
browseGenomeBrowse a genome
browserSession-classClass "BrowserSession"
browserSession-methodsGet a genome browser session
browserView-classClass "BrowserView"
BrowserViewList-classLists of BrowserView
browserView-methodsGetting browser views
browserViews-methodsGetting the browser views
Chain-classChain objects
cpneTrackCPNE1 SNP track
exportImport and export
FastaFile-classFastaFile objects
genomeBrowsersGet available genome browsers
GenomicDataData on a Genome
GenomicSelectionGenomic data selection
GFFFile-classGFFFile objects
GRangesForUCSCGenomeGRanges for a Genome
laySequence-methodsLoad a sequence
layTrack-methodsLaying tracks
liftOverLift intervals between genome builds
Quickload-classQuickload Access
QuickloadGenome-classQuickload Genome Access
RangesList-methodsRanges on a Genome
readGFFReads a file in GFF format
RTLFile-classRTLFile objects
TabixFile-methodsTabixFile Import/Export
targetsmicroRNA target sites
TrackDb-classTrack Databases
tracks-methodsAccessing track names
TwoBitFile-class2bit Files
UCSCData-classClass "UCSCData"
UCSCFile-classUCSCFile objects
ucscGenomesGet available genomes on UCSC
UCSCSchema-classUCSC Schema
ucscSession-classClass "UCSCSession"
UCSCTableQuery-classQuerying UCSC Tables
ucscTrackLine-classClass "TrackLine"
ucscTrackModes-classClass "UCSCTrackModes"
ucscTrackModes-methodsAccessing UCSC track modes
ucscView-classClass "UCSCView"
WIGFile-classWIG Import and Export
wigToBigWigConvert WIG to BigWig
wigTrackLine-classClass "GraphTrackLine"
Bioconductor-mirror/rtracklayer documentation built on July 28, 2017, 5:27 a.m.