API for Bioconductor-mirror/soGGi
Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised Over Grouped Genomic Intervals

Global functions
$,ChIPprofile-method Man page
ChIPprofile Man page
ChIPprofile-ChIPprofile Man page
ChIPprofile-class Man page
EndRule Source code
GetGRanges Source code
Ops,ChIPprofile,ChIPprofile-method Man page
Ops,ChIPprofile,numeric-method Man page
Ops,numeric,ChIPprofile-method Man page
RleSumAny Source code
[[,ChIPprofile,ANY,missing-method Man page
c,ChIPprofile-method Man page
cbind,ChIPprofile-method Man page
chipExampleBig Man page
dropNonPrimary Source code
extractScores Source code
extractSummits Source code
findCovMaxPos Source code
findconsensusRegions Man page Source code
getFragmentLength Source code
getShifts Source code
getSummitScore Source code
groupByOverlaps Man page Source code
ik_Example Man page
ik_Profiles Man page
log,ChIPprofile-method Man page
log2,ChIPprofile-method Man page
makeGRangesWithSummary Source code
makeMotifScoreRle Man page Source code
mean,ChIPprofile-method Man page
motifCov Source code
normalise Man page
normalise,ChIPprofile,character,numeric-method Man page
normalise,ChIPprofile-method Man page
normalise.ChIPprofile Man page Source code
normaliseQuantiles Man page
normaliseQuantiles,ChIPprofile-method Man page
normaliseQuantiles.ChIPprofile Man page Source code
orientBy Man page Source code
plotRegion Man page
plotRegion,ChIPprofile-method Man page
plotRegion.ChIPprofile Man page Source code
pwmCov Man page
pwmHitAsCoverage Source code
pwmHitAsGRanges Source code
pwmToCoverage Man page Source code
pwmToGranges Source code
rbind,ChIPprofile-method Man page
regionPlot Man page Source code
rleFromScoresInGRanges Source code
runConsensusRegions Source code
runFindSummit Source code
runGetShifts Source code
runGetSummitScore Source code
runMean Source code
runRegionPlot Source code
singleGRange Man page
soggi Man page
subsetProfile Source code
summitPipeline Man page Source code
winsorizeMatrix Source code
winsorizeVector Source code
zeroToMin Source code
zeroToMin2 Source code
Bioconductor-mirror/soGGi documentation built on July 1, 2017, 7:43 a.m.