Bioconductor-mirror/synlet: Hits Selection for Synthetic Lethal RNAi Screen Data
Version 1.7.0

Select hits from synthetic lethal RNAi screen data. For example, there are two identical celllines except one gene is knocked-down in one cellline. The interest is to find genes that lead to stronger lethal effect when they are knocked-down further by siRNA. Quality control and various visualisation tools are implemented. Four different algorithms could be used to pick up the interesting hits. This package is designed based on 384 wells plates, but may apply to other platforms with proper configuration.

Getting started

Package details

AuthorChunxuan Shao <[email protected]>
Bioconductor views CellBasedAssays FeatureExtraction Preprocessing QualityControl Visualization
MaintainerChunxuan Shao <[email protected]>
LicenseGPL-3
Version1.7.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/synlet")
Bioconductor-mirror/synlet documentation built on June 1, 2017, 7:11 p.m.