Files in Bioconductor-mirror/treeio
Base Classes and Functions for Phylogenetic Tree Input and Output

.Rbuildignore
.svnignore
CONTRIBUTORS.md
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/RAxML.R R/beast.R R/codeml.R R/codeml_mlc.R R/hyphy.R R/jplace.R R/merge_tree.R R/method-as-phylo.R R/method-as-treedata.R R/method-drop-tip.R R/method-get-fields.R R/method-get-tree.R R/method-groupClade.R R/method-groupOTU.R R/method-print.R R/method-show.R R/newick.R R/nhx.R R/paml.R R/paml_rst.R R/phangorn.R R/phylip.R R/phyloT.R R/r8s.R R/raxml2nwk.R R/reexport.R R/tree-utilities.R R/utilities.R R/zzz.R README.Rmd README.md
inst/extdata/BEAST/beast_mcc.tree
inst/extdata/HYPHY/ancseq.nex
inst/extdata/HYPHY/labelledtree.tree
inst/extdata/MrBayes/Gq_nxs.tre
inst/extdata/NHX/ADH.nhx
inst/extdata/NHX/compra.nhx
inst/extdata/NHX/notung.nhx
inst/extdata/NHX/phylodog.nhx
inst/extdata/PAML_Baseml/mlb
inst/extdata/PAML_Baseml/rst
inst/extdata/PAML_Codeml/mlc
inst/extdata/PAML_Codeml/rst
inst/extdata/RAxML/Dated_FluA_H3.fas
inst/extdata/RAxML/RAxML_bestTree.H3
inst/extdata/RAxML/RAxML_bipartitions.H3
inst/extdata/RAxML/RAxML_bipartitionsBranchLabels.H3
inst/extdata/RAxML/RAxML_bootstrap.H3
inst/extdata/RAxML/RAxML_info.H3
inst/extdata/pa.fas
inst/extdata/pa.nwk
inst/extdata/pa_subs.csv
inst/extdata/r8s/H3.r8s
inst/extdata/r8s/H3.tree
inst/extdata/r8s/H3_r8s_output.log
inst/extdata/sample.jplace
inst/extdata/sample.nwk
inst/extdata/sample.phy
inst/extdata/twoD.tree
man/Nnode.Rd man/Ntip.Rd man/as.treedata.Rd man/beast-class.Rd man/codeml-class.Rd man/codeml_mlc-class.Rd man/drop.tip-methods.Rd man/get.fields-methods.Rd man/get.placements-methods.Rd man/get.subs-methods.Rd man/get.tipseq-methods.Rd man/get.tree-methods.Rd man/get.treetext-methods.Rd man/getNodeNum.Rd man/getRoot.Rd man/groupClade-methods.Rd man/groupOTU-methods.Rd man/groupOTU.phylo.Rd man/hyphy-class.Rd man/is.ggtree.Rd man/jplace-class.Rd man/label_branch_paml.Rd man/mask.Rd man/merge_tree.Rd man/paml_rst-class.Rd man/phangorn-class.Rd man/phyPML.Rd man/phylip-class.Rd man/pmlToSeq.Rd man/print.beastList.Rd man/r8s-class.Rd man/raxml2nwk.Rd man/read.baseml.Rd man/read.beast.Rd man/read.codeml.Rd man/read.codeml_mlc.Rd man/read.hyphy.Rd man/read.jplace.Rd man/read.newick.Rd man/read.nhx.Rd man/read.paml_rst.Rd man/read.phylip.Rd man/read.phyloT.Rd man/read.r8s.Rd man/read.raxml.Rd man/reexports.Rd man/show-methods.Rd man/taxa_rename.Rd man/treedata-class.Rd man/write.jplace.Rd tests/testthat.R tests/testthat/test-as-phylo.R tests/testthat/test-nhx.R
treeio.Rproj
vignettes/nature.csl
vignettes/treeio.Rmd
vignettes/treeio.bib
Bioconductor-mirror/treeio documentation built on July 21, 2017, 11:51 a.m.