Bioconductor-mirror/triplex: Search and visualize intramolecular triplex-forming sequences in DNA

This package provides functions for identification and visualization of potential intramolecular triplex patterns in DNA sequence. The main functionality is to detect the positions of subsequences capable of folding into an intramolecular triplex (H-DNA) in a much larger sequence. The potential H-DNA (triplexes) should be made of as many cannonical nucleotide triplets as possible. The package includes visualization showing the exact base-pairing in 1D, 2D or 3D.

Getting started

Package details

AuthorJiri Hon, Matej Lexa, Tomas Martinek and Kamil Rajdl with contributions from Daniel Kopecek
Bioconductor views GeneRegulation SequenceMatching
MaintainerJiri Hon <[email protected]>
LicenseBSD_2_clause + file LICENSE
Version1.17.0
URL http://www.fi.muni.cz/~lexa/triplex/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/triplex")
Bioconductor-mirror/triplex documentation built on June 1, 2017, 8:03 p.m.