Bioconductor-mirror/tximport: Import and summarize transcript-level estimates for transcript- and gene-level analysis

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

Getting started

Package details

AuthorMichael Love [cre,aut], Charlotte Soneson [aut], Mark Robinson [aut], Rob Patro [ctb], Andrew Parker Morgan [ctb], Ryan C. Thompson [ctb], Matt Shirley [ctb]
Bioconductor views DataImport GeneExpression RNASeq Transcription
MaintainerMichael Love <[email protected]>
LicenseGPL (>=2)
Version1.5.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/tximport")
Bioconductor-mirror/tximport documentation built on June 1, 2017, 8:05 p.m.