Illumina 450 methylation array normalization and metrics

adaptRefQuantiles | Functions from 450-pipeline (Touleimat & Tost) |

agep | Age Prediction from methylomic expression data |

as.methylumi-methods | Methods for Function 'as.methylumi' |

beadc | Calculates the number of samples with bead count <3 for each... |

beadcount | Creates matrix of beacounts from minfi data. |

Beta2M | Internal functions for peak.correction (fuks) |

BMIQ | Beta-Mixture Quantile (BMIQ) Normalisation method for... |

bscon | Calculate bisulphite conversion |

colnames-methods | Methods for Function 'colnames' in Package 'wateRmelon' |

combo | Combine MethyLumiSet objects |

dasen | Calculate normalized betas from Illumina 450K methylation... |

dasen-exprmethy450 | Calculate normalized betas from exprmethy450 of Illumina 450K... |

dasen-MethyLumiSet | Calculate normalized betas from MethyLumiSets of Illumina... |

dasen-MethySet | Calculate normalized betas from Illumina 450K methylation... |

db1 | Internal wateRmelon functions for calculating betas |

dmrse | Standard error of iDMR 450k array DNA methylation features |

dmrse-methods | Methods for Function 'dmrse' in Package 'wateRmelon' |

genki | SNP derived performance metrics for Illumina 450K DNA... |

genki-methods | Methods for Function 'genki' in Package 'wateRmelon' |

genkme | Internal functions for genotype-based normalization metrics |

got | Internal functions for Illumina i450 normalization functions |

iDMR | Imprinting differentially methylated region probes of... |

melon | Small MethyLumi data set for examples and testing |

metrics | Calculate a full set of 450K normalization/performance... |

outlyx | Identify Outliers within Methylumi and Minfi packaged objects |

outlyx-methods | Methods for Function 'outlyx' in Package 'wateRmelon' |

pfilter | Basic data filtering for Illumina 450 methylation data |

pwod | Probe-Wise Outlier Detection |

pwod-methods | Methods for Function 'pwod' in Package 'wateRmelon' |

qual | A measure of Normalization Violence |

readEPIC | readEPIC |

seabi | Calculate a performance metric based on male-female... |

seabi-methods | Methods for Function 'seabi' in Package 'wateRmelon' |

seabird | Calculate ROC area-under-curve for X-chromosome sex... |

sextest | Test Illumina methylation 450K array probes for sex... |

wateRmelon-package | Illumina 450K arrays: normalization and performance metrics |

wm_internal | Internal functions for readEPIC and other wateRmelon... |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.