Man pages for Bioconductor-mirror/wavClusteR
Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data

annotateClustersAnnotate clusters with respect to transcript features
estimateFDREstimate False Discovery Rate within the relative...
exportClustersExport clusters as BED track
exportCoverageExport coverage as BigWig track
exportHighConfSubExport high-confidence substitutions as BED track
exportSequencesExport cluster sequences for motif search analysis
filterClustersMerge clusters and compute all relevant cluster statistics
FitMixtureModelFit a non-parametric mixture model from all identified...
getAllSubIdentify all substitutions observed across genomic positions...
getClustersIdentify clusters containing high-confidence substitutions...
getExpIntervalIdentify the interval of relative substitution frequencies...
getHighConfSubClassify substitutions based on identified RSF interval and...
getMetaCoverageCompute and plot distribution of average coverage or relative...
getMetaGeneCompute and plot metagene profile using identified clusters
getMetaTSSCompute and plot read densities in genomic regions around...
modelComponents of the non-parametric mixture moodel fitted on...
plotSizeDistributionPlot the distribution of cluster sizes
plotStatisticsPairs plot visualization of clusters statistics
plotSubstitutionsBarplot visualization of the number of genomic positions...
readSortedBamLoad a sorted BAM file
wavClusteR-packageA comprehensive pipeline for the analysis of PAR-CLIP data....
Bioconductor-mirror/wavClusteR documentation built on June 1, 2017, 8:10 p.m.