Bioconductor-mirror/zFPKM: A suite of functions to facilitate zFPKM transformations
Version 0.99.18

Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.

Getting started

Package details

Bioconductor views FeatureExtraction GeneExpression RNASeq Software
Maintainer
LicenseGPL-3 | file LICENSE
Version0.99.18
URL https://github.com/ronammar/zFPKM/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/zFPKM")
Bioconductor-mirror/zFPKM documentation built on Aug. 8, 2017, 12:38 a.m.