Files in Bioconductor/AnnotationForge
Code for Building Annotation Database Packages

DESCRIPTION
NAMESPACE
NEWS
R/NCBI_getters.R R/makeAnnDbPkg.R R/makeChipPackageFromDataFrames.R R/makeInparanoidDbs.R R/makeOrgPackage.R R/makeOrgPackageFromNCBI.R R/makeProbePackage.R R/sqlForge_baseMapBuilder.R R/sqlForge_makeAnnPkgs.R R/sqlForge_schemaGen.R R/sqlForge_seqnames.R R/sqlForge_tableBuilder.R R/sqlForge_utils.R R/sqlForge_wrapBaseDBPkgs.R R/test_AnnotationForge_package.R
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/DESCRIPTION
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/NAMESPACE
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/R/zzz.R
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/inst/extdata/.gitignore
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ARACYC.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ARACYCENZYME.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/BASE.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHR.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHRLENGTHS.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHRLOC.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENTREZID.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENZYME.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENZYME2TAIR.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GENENAME.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GO.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GO2ALLTAIRS.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/MAPCOUNTS.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ORGANISM.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PATH.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PATH2TAIR.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PMID.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PMID2TAIR.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/REFSEQ.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/SYMBOL.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/_dbconn.Rd
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/runalltests.R inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/unit/test.R
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/DESCRIPTION
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/NAMESPACE
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/R/zzz.R
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/inst/extdata/.gitignore
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ACCNUM.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ARACYC.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ARACYCENZYME.Rd
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inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHRLOC.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ENZYME.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ENZYME2PROBE.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GENENAME.Rd
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inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO2ALLPROBES.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO2PROBE.Rd
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inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PATH.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PATH2PROBE.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PMID.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PMID2PROBE.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/SYMBOL.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/_dbconn.Rd
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/runalltests.R
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/runalltests.Rout.save
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/unit/test.R
inst/AnnDbPkg-templates/BASEPKG.DB/DESCRIPTION
inst/AnnDbPkg-templates/BASEPKG.DB/NAMESPACE
inst/AnnDbPkg-templates/BASEPKG.DB/inst/extdata/.gitignore
inst/AnnDbPkg-templates/BASEPKG.DB/man/BASE.Rd
inst/AnnDbPkg-templates/COELICOLOR.DB/DESCRIPTION
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inst/AnnDbPkg-templates/COELICOLOR.DB/R/zzz.R
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inst/AnnDbPkg-templates/COELICOLOR.DB/man/PROTEINGI.Rd
inst/AnnDbPkg-templates/COELICOLOR.DB/man/REFSEQ.Rd
inst/AnnDbPkg-templates/COELICOLOR.DB/man/SYMBOL.Rd
inst/AnnDbPkg-templates/COELICOLOR.DB/man/_dbconn.Rd
inst/AnnDbPkg-templates/COELICOLOR.DB/tests/runalltests.R inst/AnnDbPkg-templates/COELICOLOR.DB/tests/unit/test.R
inst/AnnDbPkg-templates/GO.DB/DESCRIPTION
inst/AnnDbPkg-templates/GO.DB/NAMESPACE
inst/AnnDbPkg-templates/GO.DB/R/zzz.R
inst/AnnDbPkg-templates/GO.DB/inst/extdata/.gitignore
inst/AnnDbPkg-templates/GO.DB/man/BASE.Rd
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inst/AnnDbPkg-templates/GO.DB/man/OBSOLETE.Rd
inst/AnnDbPkg-templates/GO.DB/man/SYNONYM.Rd
inst/AnnDbPkg-templates/GO.DB/man/TERM.Rd
inst/AnnDbPkg-templates/GO.DB/man/_dbconn.Rd
inst/AnnDbPkg-templates/INPARANOID.DB/DESCRIPTION
inst/AnnDbPkg-templates/INPARANOID.DB/NAMESPACE
inst/AnnDbPkg-templates/INPARANOID.DB/R/zzz.R
inst/AnnDbPkg-templates/INPARANOID.DB/inst/extdata/.gitignore
inst/AnnDbPkg-templates/INPARANOID.DB/man/BASE.Rd
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inst/AnnDbPkg-templates/INPARANOID.DB/man/_dbconn.Rd
inst/AnnDbPkg-templates/KEGG.DB/DESCRIPTION
inst/AnnDbPkg-templates/KEGG.DB/LICENSE
inst/AnnDbPkg-templates/KEGG.DB/NAMESPACE
inst/AnnDbPkg-templates/KEGG.DB/R/zzz.R
inst/AnnDbPkg-templates/KEGG.DB/inst/extdata/.gitignore
inst/AnnDbPkg-templates/KEGG.DB/man/BASE.Rd
inst/AnnDbPkg-templates/KEGG.DB/man/ENZYMEID2GO.Rd
inst/AnnDbPkg-templates/KEGG.DB/man/EXTID2PATHID.Rd
inst/AnnDbPkg-templates/KEGG.DB/man/GO2ENZYMEID.Rd
inst/AnnDbPkg-templates/KEGG.DB/man/MAPCOUNTS.Rd
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inst/AnnDbPkg-templates/MALARIA.DB/DESCRIPTION
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inst/AnnDbPkg-templates/MALARIA.DB/R/zzz.R
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inst/AnnDbPkg-templates/MALARIA.DB/man/_dbconn.Rd
inst/AnnDbPkg-templates/MALARIA.DB/tests/runalltests.R inst/AnnDbPkg-templates/MALARIA.DB/tests/unit/test.R
inst/AnnDbPkg-templates/NCBICHIP.DB/DESCRIPTION
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inst/AnnDbPkg-templates/NCBICHIP.DB/R/zzz.R
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inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHRLOC.Rd
inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENSEMBL.Rd
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inst/AnnDbPkg-templates/NCBICHIP.DB/man/MGI.Rd
inst/AnnDbPkg-templates/NCBICHIP.DB/man/OMIM.Rd
inst/AnnDbPkg-templates/NCBICHIP.DB/man/ORGANISM.Rd
inst/AnnDbPkg-templates/NCBICHIP.DB/man/PATH.Rd
inst/AnnDbPkg-templates/NCBICHIP.DB/man/PFAM.Rd
inst/AnnDbPkg-templates/NCBICHIP.DB/man/PMID.Rd
inst/AnnDbPkg-templates/NCBICHIP.DB/man/PROSITE.Rd
inst/AnnDbPkg-templates/NCBICHIP.DB/man/REFSEQ.Rd
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inst/AnnDbPkg-templates/NCBICHIP.DB/man/_dbconn.Rd
inst/AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.R
inst/AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.Rout.save
inst/AnnDbPkg-templates/NCBICHIP.DB/tests/unit/test.R
inst/AnnDbPkg-templates/NCBIORG.DB/DESCRIPTION
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inst/AnnDbPkg-templates/NCBIORG.DB/R/zzz.R
inst/AnnDbPkg-templates/NCBIORG.DB/inst/extdata/.gitignore
inst/AnnDbPkg-templates/NCBIORG.DB/man/ACCNUM.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/ALIAS2EG.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/BASE.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/CHR.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/CHRLENGTHS.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/CHRLOC.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBL.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLPROT.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLTRANS.Rd
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inst/AnnDbPkg-templates/NCBIORG.DB/man/GENENAME.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/GO.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/MAP.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/MAPCOUNTS.Rd
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inst/AnnDbPkg-templates/NCBIORG.DB/man/OMIM.Rd
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inst/AnnDbPkg-templates/NCBIORG.DB/man/PFAM.Rd
inst/AnnDbPkg-templates/NCBIORG.DB/man/PMID.Rd
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inst/AnnDbPkg-templates/NCBIORG.DB/tests/runalltests.R inst/AnnDbPkg-templates/NCBIORG.DB/tests/unit/test.R
inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/DESCRIPTION
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inst/AnnDbPkg-templates/YEASTCHIP.DB/DESCRIPTION
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inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ORGANISM.Rd
inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PATH.Rd
inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PATH2PROBE.Rd
inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PMID.Rd
inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PMID2PROBE.Rd
inst/AnnDbPkg-templates/YEASTCHIP.DB/man/_dbconn.Rd
inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/runalltests.R
inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/runalltests.Rout.save
inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/unit/test.R
inst/AnnDbPkg-templates/YEASTNCBI.DB/DESCRIPTION
inst/AnnDbPkg-templates/YEASTNCBI.DB/NAMESPACE
inst/AnnDbPkg-templates/YEASTNCBI.DB/R/zzz.R
inst/AnnDbPkg-templates/YEASTNCBI.DB/inst/extdata/.gitignore
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ACCNUM.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ALIAS2EG.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/BASE.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/CHR.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/CHRLENGTHS.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ENZYME.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GENENAME.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GO.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GO2ALLEGS.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/MAPCOUNTS.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ORF.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ORGANISM.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/PATH.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/PMID.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/REFSEQ.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/SGD.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/SYMBOL.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/UNIPROT.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/man/_dbconn.Rd
inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/runalltests.R inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/unit/test.R
inst/NOTES-Herve
inst/ProbePkg-template/DESCRIPTION
inst/ProbePkg-template/NAMESPACE
inst/ProbePkg-template/R/zzz.R
inst/ProbePkg-template/data/.gitignore
inst/ProbePkg-template/man/@[email protected]
inst/TODO
inst/extdata/GO_finch.txt
inst/extdata/GentlemanLab/ANNDBPKG-INDEX.TXT
inst/extdata/GentlemanLab/chip-batch-script.R inst/extdata/GentlemanLab/generateSchemas.R inst/extdata/GentlemanLab/org-batch-script.R
inst/extdata/HG-U95Av2_probe_tab.gz
inst/extdata/finch_info.txt
inst/extdata/hcg110_ID
inst/extdata/hgu95av2_ID
inst/extdata/inp8_Full_species_mapping
inst/extdata/inp8_metadata
inst/extdata/unigene.txt
inst/extdata/viableIDs.rda
inst/script/fasterOrgRecipe.R inst/script/makeNoSchemaChipDb.R inst/script/makeNoSchemaDb.R inst/script/viableIDs.R
inst/seqnames-template/DESCRIPTION
inst/seqnames-template/NAMESPACE
inst/seqnames-template/inst/extdata/dataFiles/Arabidopsis_thaliana.csv
inst/seqnames-template/inst/extdata/dataFiles/Caenorhabditis_elegans.csv
inst/seqnames-template/inst/extdata/dataFiles/Cyanidioschyzon_merolae.csv
inst/seqnames-template/inst/extdata/dataFiles/Drosophila_melanogaster.csv
inst/seqnames-template/inst/extdata/dataFiles/Homo_sapiens.csv
inst/seqnames-template/inst/extdata/dataFiles/Oryza_sativa.csv
inst/seqnames-template/inst/extdata/dataFiles/Populus_trichocarpa.csv
inst/seqnames-template/inst/extdata/dataFiles/Saccharomyces_cerevisiae.csv
inst/seqnames-template/inst/extdata/dataFiles/Zea_mays.csv
inst/unitTests/test_makeOrgPackage.R man/AnnDbPkg-maker.Rd man/available.db0pkgs.Rd man/generateSeqnames_db.Rd man/getProbeDataAffy.Rd man/getProbeData_1lq.Rd man/makeChipPackageFromDataFrames.Rd man/makeInpDb.Rd man/makeOrgPackage.Rd man/makeOrgPackageFromNCBI.Rd man/makeProbePackage.Rd man/sqlForge-makeCHIPDB.Rd man/sqlForge-popDB.Rd man/sqlForge-wrapDBPackages.Rd tests/AnnotationForge_unit_tests.R
vignettes/DBschema-discussion.txt
vignettes/Homo_sapiens.pdf
vignettes/MakingNewAnnotationPackages.Rnw
vignettes/MakingNewOrganismPackages.Rmd
vignettes/SQLForge.Rnw
vignettes/makeProbePackage.Rnw
Bioconductor/AnnotationForge documentation built on Nov. 1, 2017, 3:48 a.m.