API for Bioconductor/Biobase
Biobase: Base functions for Bioconductor

Global functions
$,AnnotatedDataFrame-method Man page
$,eSet-method Man page
$<-,AnnotatedDataFrame-method Man page
$<-,Versions-method Man page
$<-,eSet-method Man page
Aggregate Man page Source code
AnnotatedDataFrame Man page
AnnotatedDataFrame,data.frame,data.frame-method Man page
AnnotatedDataFrame,data.frame,missing-method Man page
AnnotatedDataFrame,missing,missing-method Man page
AnnotatedDataFrame-class Man page
AssayData Man page
AssayData-class Man page
Biobase Man page
Biobase-package Man page
Compare,Versions,Versions-method Man page
Compare,Versions,character-method Man page
Compare,character,Versions-method Man page
DollarNames.eSet Source code
ExpressionSet Man page
ExpressionSet,environment-method Man page
ExpressionSet,matrix-method Man page
ExpressionSet,missing-method Man page
ExpressionSet-class Man page
MIAME Man page Source code
MIAME-class Man page
MIAxE Man page
MIAxE-class Man page
MultiSet Man page
MultiSet-class Man page
NChannelSet Man page
NChannelSet-class Man page
SW Man page
ScalarCharacter-class Man page
ScalarInteger-class Man page
ScalarLogical-class Man page
ScalarNumeric-class Man page
ScalarObject-class Man page
SnpSet Man page
SnpSet-class Man page
Versioned Man page
Versioned-class Man page
VersionedBiobase Man page
VersionedBiobase-class Man page
Versions Man page
Versions-class Man page
VersionsNull Man page
VersionsNull-class Man page
[,AnnotatedDataFrame-method Man page
[,Versions-method Man page
[,container-method Man page
[,eSet-method Man page
[<-,Versions-method Man page
[[,AnnotatedDataFrame-method Man page
[[,container-method Man page
[[,eSet-method Man page
[[<-,AnnotatedDataFrame-method Man page
[[<-,Versions-method Man page
[[<-,container-method Man page
[[<-,eSet-method Man page
aaMap Man page
abstract Man page
abstract,MIAME-method Man page
abstract,eSet-method Man page
addVigs2WinMenu Man page Source code
aggenv Man page
aggenv,aggregator-method Man page
aggfun Man page
aggfun,aggregator-method Man page
aggregator Man page
aggregator-class Man page
annotatedDataFrameFrom Man page
annotatedDataFrameFrom,AssayData-method Man page
annotatedDataFrameFrom,NULL-method Man page
annotatedDataFrameFrom,matrix-method Man page
annotatedDataFrameFromAssayData Source code
annotatedDataFrameFromMatrix Source code
annotatedDataFrameFromNull Source code
annotatedDataset Man page
annotatedDataset-class Man page
annotation,eSet-method Man page
annotation<-,eSet,character-method Man page
anyMissing Man page Source code
as.data.frame.ExpressionSet Man page Source code
as.numeric_version Source code
asValidVersions Source code
assayData Man page
assayData,AssayData-method Man page
assayData,eSet-method Man page
assayData<- Man page
assayData<-,NChannelSet,environment-method Man page
assayData<-,NChannelSet,list-method Man page
assayData<-,eSet,AssayData-method Man page
assayDataDim Source code
assayDataDimnames Source code
assayDataDims Source code
assayDataElement Man page Source code
assayDataElement<- Man page
assayDataElementNames Man page Source code
assayDataElementReplace Man page Source code
assayDataEnvLock Source code
assayDataGets_NChannelSet Source code
assayDataNew Man page Source code
assayDataStorageMode Source code
assayDataStorageModeReplace Source code
assayDataSubsetElements Source code
assayDataValidMembers Man page Source code
biocReposList Man page
buildBiobaseOpts Source code
cache Man page Source code
canVersionCompare Source code
channel Man page
channel,NChannelSet,character-method Man page
channelNames Man page
channelNames,NChannelSet-method Man page
channelNames<- Man page
channelNames<-,NChannelSet,character-method Man page
channelNames<-,NChannelSet,list-method Man page
characterORMIAME-class Man page
checkClass Source code
class.NChannelSet Man page
class:AnnotatedDataFrame Man page
class:ExpressionSet Man page
class:MIAME Man page
class:MIAxE Man page
class:MultiSet Man page
class:SnpSet Man page
class:aggregator Man page
class:annotatedDataset Man page
class:characterORMIAME Man page
class:container Man page
class:eSet Man page
class:exprList Man page
class:exprMatrix Man page
class:exprSet Man page
class:phenoData Man page
classVersion Man page
classVersion,ANY-method Man page
classVersion,Versioned-method Man page
classVersion,character-method Man page
classVersion<- Man page
classVersion<-,Versioned,Versions-method Man page
coerce,AnnotatedDataFrame,data.frame-method Man page
coerce,ExpressionSet,data.frame-method Man page
coerce,Versions,character-method Man page
coerce,data.frame,AnnotatedDataFrame-method Man page
coerce,eSet,ExpressionSet-method Man page
coerce,eSet,MultiSet-method Man page
coerce,exprSet,ExpressionSet-method Man page
coerce,phenoData,AnnotatedDataFrame-method Man page
combine,AnnotatedDataFrame,AnnotatedDataFrame-method Man page
combine,AssayData,AssayData-method Man page
combine,MIAME,MIAME-method Man page
combine,eSet,ANY-method Man page
combine,eSet,eSet-method Man page
container Man page
container-class Man page
content Man page
content,container-method Man page
contents Man page
contents,environment-method Man page
copyEnv Man page Source code
copySubstitute Man page Source code
createPackage Man page Source code
data.frameOrNULL-class Man page
data:aaMap Man page
data:geneCov Man page
data:geneCovariate Man page
data:geneData Man page
data:reporter Man page
data:sample.ExpressionSet Man page
data:sample.MultiSet Man page
data:sample.eSet Man page
data:sample.exprSet Man page
data:sample.exprSet.1 Man page
data:seD Man page
description Man page
description,eSet-method Man page
description<- Man page
description<-,eSet,MIAME-method Man page
df2pD Man page
dim,AnnotatedDataFrame-method Man page
dim,eSet-method Man page
dimLabels Man page
dimLabels,AnnotatedDataFrame-method Man page
dimLabels<- Man page
dimLabels<-,AnnotatedDataFrame,character-method Man page
dimnames Man page
dimnames,AnnotatedDataFrame-method Man page
dimnames,eSet-method Man page
dimnames<- Man page
dimnames<-,AnnotatedDataFrame-method Man page
dimnames<-,eSet-method Man page
dims Man page
dims,eSet-method Man page
dumpPackTxt Man page Source code
eList Man page
eList,eSet-method Man page
eList<- Man page
eList<-,eSet,AssayData-method Man page
eSet Man page
eSet-class Man page
esApply Man page Source code
esApply,ExpressionSet-method Man page
experimentData Man page
experimentData,eSet-method Man page
experimentData<- Man page
experimentData<-,eSet,MIAME-method Man page
expinfo Man page
expinfo,MIAME-method Man page
exprList Man page
exprList-class Man page
exprMatrix Man page
exprMatrix-class Man page
exprSet Man page
exprSet-class Man page
exprs Man page
exprs,ExpressionSet-method Man page
exprs,SnpSet-method Man page
exprs,eSet-method Man page
exprs<- Man page
exprs<-,ExpressionSet,matrix-method Man page
exprs<-,SnpSet,matrix-method Man page
exprs<-,eSet,AssayData-method Man page
fData Man page
fData,eSet-method Man page
fData<- Man page
fData<-,eSet,data.frame-method Man page
featureData Man page
featureData,eSet-method Man page
featureData<- Man page
featureData<-,eSet,AnnotatedDataFrame-method Man page
featureNames Man page
featureNames,AnnotatedDataFrame-method Man page
featureNames,AssayData-method Man page
featureNames,eSet-method Man page
featureNames<- Man page
featureNames<-,AnnotatedDataFrame-method Man page
featureNames<-,AssayData-method Man page
featureNames<-,eSet-method Man page
fvarLabels Man page
fvarLabels,eSet-method Man page
fvarLabels<- Man page
fvarLabels<-,eSet-method Man page
fvarMetadata Man page
fvarMetadata,eSet-method Man page
fvarMetadata<- Man page
fvarMetadata<-,eSet,data.frame-method Man page
geneCov Man page
geneCovariate Man page
geneData Man page
geneNames Man page
geneNames,ExpressionSet-method Man page
geneNames<- Man page
geneNames<-,ExpressionSet,character-method Man page
getExpData Man page
getExpData,eSet,character-method Man page
getPkgVigs Man page Source code
harmonizeDimnames Source code
head.AnnotatedDataFrame Man page Source code
hybridizations Man page
hybridizations,MIAME-method Man page
initfun Man page
initfun,aggregator-method Man page
initialize,AnnotatedDataFrame-method Man page
initialize,ExpressionSet-method Man page
initialize,MultiSet-method Man page
initialize,NChannelSet-method Man page
initialize,SnpSet-method Man page
initialize,Versioned-method Man page
initialize,Versions-method Man page
initialize,VersionsNull-method Man page
initialize,aggregator-method Man page
initialize,annotatedDataset-method Man page
initialize,eSet-method Man page
initialize,exprSet-method Man page
initialize,phenoData-method Man page
isCurrent Man page
isCurrent,ANY,ANY-method Man page
isCurrent,MIAME,missing-method Man page
isCurrent,Versioned,character-method Man page
isCurrent,Versioned,missing-method Man page
isUnique Man page Source code
isValidVersion Source code
isVersioned Man page
isVersioned,ANY-method Man page
isVersioned,Versioned-method Man page
isVersioned,character-method Man page
l2e Man page Source code
lcPrefix Man page Source code
lcPrefixC Man page Source code
lcSuffix Man page Source code
length,container-method Man page
listLen Man page Source code
listOrEnv Man page
listOrEnv-class Man page
locked Man page
locked,container-method Man page
makeDataPackage Man page
makeDataPackage,ANY-method Man page
makeDataPackage,ExpressionSet-method Man page
matchpt Man page Source code
mkScalar Man page Source code
multiassign Man page Source code
ncol,AnnotatedDataFrame-method Man page
ncol,eSet-method Man page
new_env_size Source code
nitContents Source code
normControls Man page
normControls,MIAME-method Man page
note Man page Source code
notes Man page
notes,MIAME-method Man page
notes,eSet-method Man page
notes<- Man page
notes<-,MIAME,character-method Man page
notes<-,MIAME,list-method Man page
notes<-,eSet,ANY-method Man page
nvalid_NChannelAssayNames Source code
onAttach Source code
onLoad Source code
onUnload Source code
openPDF Man page Source code
openVignette Man page Source code
otherInfo Man page
otherInfo,MIAME-method Man page
pD2Rd Source code
pData Man page
pData,AnnotatedDataFrame-method Man page
pData,eSet-method Man page
pData<- Man page
pData<-,AnnotatedDataFrame,data.frame-method Man page
pData<-,eSet,data.frame-method Man page
package.version Man page Source code
phenoData Man page
phenoData,eSet-method Man page
phenoData-class Man page
phenoData<- Man page
phenoData<-,eSet,AnnotatedDataFrame-method Man page
preproc Man page
preproc,MIAME-method Man page
preproc,eSet-method Man page
preproc<- Man page
preproc<-,MIAME-method Man page
preproc<-,eSet-method Man page
protocolData Man page
protocolData,eSet-method Man page
protocolData<- Man page
protocolData<-,eSet,AnnotatedDataFrame-method Man page
protocolData<-,eSet,character-method Man page
pubMedIds Man page
pubMedIds,MIAME-method Man page
pubMedIds,eSet-method Man page
pubMedIds<- Man page
pubMedIds<-,MIAME,ANY-method Man page
pubMedIds<-,eSet,character-method Man page
read.AnnotatedDataFrame Man page Source code
read.MIAME Man page Source code
read.exprSet Man page
read.pD Man page
read.phenoData Man page
readExpressionSet Man page Source code
reporter Man page
reporterNames Man page
reporterNames,eSet-method Man page
reporterNames<- Man page
reporterNames<-,eSet,character-method Man page
reverseSplit Man page Source code
rowMax Man page Source code
rowMedians Man page
rowMedians,ExpressionSet-method Man page
rowMedians,matrix-method Man page
rowMin Man page Source code
rowQ Man page
rowQ,ExpressionSet,numeric-method Man page
rowQ,matrix,numeric-method Man page
sValidVersion Source code
sample.ExpressionSet Man page
sample.MultiSet Man page
sample.eSet Man page
sample.exprSet Man page
sample.exprSet.1 Man page
sampleNames Man page
sampleNames,AnnotatedDataFrame-method Man page
sampleNames,AssayData-method Man page
sampleNames,NChannelSet-method Man page
sampleNames,eSet-method Man page
sampleNames<- Man page
sampleNames<-,AnnotatedDataFrame,ANY-method Man page
sampleNames<-,AssayData,ANY-method Man page
sampleNames<-,AssayData,list-method Man page
sampleNames<-,NChannelSet,list-method Man page
sampleNames<-,eSet,ANY-method Man page
samples Man page
samples,MIAME-method Man page
se.exprs Man page
se.exprs<- Man page
seD Man page
selectChannels Man page
selectChannels,NChannelSet,character-method Man page
selectSome Man page Source code
show,AnnotatedDataFrame-method Man page
show,MIAME-method Man page
show,MIAxE-method Man page
show,ScalarCharacter-method Man page
show,ScalarObject-method Man page
show,Versioned-method Man page
show,Versions-method Man page
show,VersionsNull-method Man page
show,container-method Man page
show,eSet-method Man page
showAnnotatedDataFrame Source code
snpCall Man page
snpCall,SnpSet-method Man page
snpCall<- Man page
snpCall<-,SnpSet,matrix-method Man page
snpCallProbability Man page
snpCallProbability,SnpSet-method Man page
snpCallProbability<- Man page
snpCallProbability<-,SnpSet,matrix-method Man page
storageMode Man page
storageMode,AssayData-method Man page
storageMode,eSet-method Man page Man page
storageMode<- Man page
storageMode<-,AssayData,character-method Man page
storageMode<-,eSet,character-method Man page Man page
strbreak Man page Source code
subListExtract Man page Source code
tail.AnnotatedDataFrame Man page Source code
testBioCConnection Man page Source code
unsafeSetSlot Source code
updateESetTo Source code
updateObject,AnnotatedDataFrame-method Man page
updateObject,ExpressionSet-method Man page
updateObject,MIAME-method Man page
updateObject,Versions-method Man page
updateObject,eSet-method Man page
updateObjectTo Man page
updateObjectTo,ANY,ANY-method Man page
updateObjectTo,eSet,eSet-method Man page
updateOldESet Man page Source code
updateOldMiame Man page
userQuery Man page Source code
validAnnotatedDataFrame Source code
validMsg Man page Source code
validate_assayDataElementReplace Source code
varLabels Man page
varLabels,AnnotatedDataFrame-method Man page
varLabels,eSet-method Man page
varLabels<- Man page
varLabels<-,AnnotatedDataFrame-method Man page
varLabels<-,eSet-method Man page
varMetadata Man page
varMetadata,AnnotatedDataFrame-method Man page
varMetadata,eSet-method Man page
varMetadata<- Man page
varMetadata<-,AnnotatedDataFrame,data.frame-method Man page
varMetadata<-,eSet,data.frame-method Man page
wrapcat Source code
write.AnnotatedDataFrame Man page Source code
write.exprs Man page
write.exprs,ExpressionSet-method Man page
Bioconductor/Biobase documentation built on Sept. 2, 2017, 12:13 a.m.