API for Bioconductor/DelayedArray
Delayed operations on array-like objects

Global functions
!,DelayedArray-method Man page
+,DelayedArray,missing-method Man page
-,DelayedArray,missing-method Man page
Array Man page
Array-class Man page
ArrayArbitraryGrid Man page Source code
ArrayArbitraryGrid-class Man page
ArrayGrid Man page
ArrayGrid-class Man page
ArrayRegularGrid Man page Source code
ArrayRegularGrid-class Man page
ArrayViewport Man page Source code
ArrayViewport-class Man page
ChunkedRleArraySeed-class Man page
DelayedArray Man page
DelayedArray,ANY-method Man page
DelayedArray,DelayedArray-method Man page
DelayedArray,RleArraySeed-method Man page
DelayedArray-class Man page
DelayedArray-utils Man page
DelayedArray_Math2 Source code
DelayedArray_Ops Source code
DelayedArray_Ops_COMBINE_seeds Source code
DelayedArray_Ops_with_left_vector Source code
DelayedArray_Ops_with_right_vector Source code
DelayedArray_acbind Source code
DelayedArray_apply Source code
DelayedArray_arbind Source code
DelayedArray_block_Summary Source code
DelayedArray_block_anyNA Source code
DelayedArray_block_mean Source code
DelayedArray_block_which Source code
DelayedArray_cbind Source code
DelayedArray_rbind Source code
DelayedMatrix Man page
DelayedMatrix-class Man page
DelayedMatrix_block_colMaxs Source code
DelayedMatrix_block_colMeans Source code
DelayedMatrix_block_colMins Source code
DelayedMatrix_block_colRanges Source code
DelayedMatrix_block_colSums Source code
DelayedMatrix_block_mult_by_left_matrix Source code
DelayedMatrix_block_rowMaxs Source code
DelayedMatrix_block_rowMeans Source code
DelayedMatrix_block_rowMins Source code
DelayedMatrix_block_rowRanges Source code
DelayedMatrix_block_rowSums Source code
RealizationSink Source code
RealizationSink-class Man page
RleArray Man page Source code
RleArray-class Man page
RleArraySeed Source code
RleArraySeed-class Man page
RleMatrix Man page
RleMatrix-class Man page
RleRealizationSink Source code
RleRealizationSink-class Man page
SolidRleArraySeed-class Man page
[,DelayedArray-method Man page
[<-,DelayedArray-method Man page
[[,Array-method Man page
[[,DelayedArray-method Man page
\%*\% Man page
\%*\%,DelayedMatrix,DelayedMatrix-method Man page
\%*\%,DelayedMatrix,matrix-method Man page
\%*\%,matrix,DelayedMatrix-method Man page
acbind Man page
acbind,DelayedArray-method Man page
acbind,array-method Man page
anyNA,DelayedArray-method Man page
append_Rle_to_sink Source code
append_chunk Source code
apply Man page
apply,DelayedArray-method Man page
arbind Man page
arbind,DelayedArray-method Man page
arbind,array-method Man page
arrayRealizationSink Source code
arrayRealizationSink-class Man page
as.array,DelayedArray-method Man page
as.array.DelayedArray Man page Source code
as.character,ArrayGrid-method Man page
as.character,DelayedArray-method Man page
as.character.ArrayGrid Man page Source code Source code
as.character.DelayedArray Man page Source code
as.complex,DelayedArray-method Man page
as.complex.DelayedArray Man page Source code
as.data.frame,DelayedArray-method Man page
as.data.frame.DelayedArray Man page Source code
as.integer,DelayedArray-method Man page
as.integer.DelayedArray Man page Source code
as.logical,DelayedArray-method Man page
as.logical.DelayedArray Man page Source code
as.matrix,DelayedArray-method Man page
as.matrix.DelayedArray Man page Source code
as.numeric,DelayedArray-method Man page
as.numeric.DelayedArray Man page Source code
as.raw,DelayedArray-method Man page
as.raw.DelayedArray Man page Source code
as.vector,DelayedArray-method Man page
as.vector.DelayedArray Man page Source code
as_DelayedMatrix_objects Source code
as_RleArray Source code
as_array_or_matrix Source code
bind arrays Man page
bind-arrays Man page
block_APPLY Source code
block_APPLY_and_COMBINE Source code
block_MAPPLY Source code
block_processing Man page
breakpoints2offsets Source code
c,DelayedArray-method Man page
cbind Man page
cbind,DelayedArray-method Man page
cbind,DelayedMatrix-method Man page
check_and_combine_dims Source code
chunk_dim Man page
chunk_dim,RealizationSink-method Man page
class:Array Man page
class:ArrayArbitraryGrid Man page
class:ArrayGrid Man page
class:ArrayRegularGrid Man page
class:ArrayViewport Man page
class:ChunkedRleArraySeed Man page
class:DelayedArray Man page
class:DelayedMatrix Man page
class:RealizationSink Man page
class:RleArray Man page
class:RleArraySeed Man page
class:RleMatrix Man page
class:RleRealizationSink Man page
class:SolidRleArraySeed Man page
class:arrayRealizationSink Man page
close,RealizationSink-method Man page
coerce,ANY,RleArray-method Man page
coerce,ANY,RleMatrix-method Man page
coerce,ChunkedRleArraySeed,SolidRleArraySeed-method Man page
coerce,DataFrame,RleArray-method Man page
coerce,DelayedArray,DelayedMatrix-method Man page
coerce,DelayedArray,RleArray-method Man page
coerce,DelayedMatrix,DataFrame-method Man page
coerce,DelayedMatrix,RleMatrix-method Man page
coerce,DelayedMatrix,dgCMatrix-method Man page
coerce,DelayedMatrix,sparseMatrix-method Man page
coerce,RleArray,Rle-method Man page
coerce,RleArray,RleMatrix-method Man page
coerce,RleList,RleArray-method Man page
coerce,RleMatrix,DataFrame-method Man page
coerce,RleMatrix,RleList-method Man page
coerce,RleRealizationSink,ChunkedRleArraySeed-method Man page
coerce,RleRealizationSink,DelayedArray-method Man page
coerce,RleRealizationSink,Rle-method Man page
coerce,RleRealizationSink,RleArray-method Man page
coerce,SolidRleArraySeed,Rle-method Man page
coerce,arrayRealizationSink,DelayedArray-method Man page
colMaxs Man page
colMaxs,DelayedMatrix-method Man page
colMeans Man page
colMeans,DelayedMatrix-method Man page
colMins Man page
colMins,DelayedMatrix-method Man page
colRanges Man page
colRanges,DelayedMatrix-method Man page
colSums Man page
colSums,DelayedMatrix-method Man page
colblock_APPLY Source code
colblock_APPLY_and_COMBINE Source code
collect_objects Source code
combine_array_objects Source code
combine_dimnames Source code
combine_dimnames_along Source code
combine_dims_along Source code
combine_names Source code
csplit_2D_array_data Source code
dim,ArrayArbitraryGrid-method Man page
dim,ArrayRegularGrid-method Man page
dim,ArrayViewport-method Man page
dim,ConformableSeedCombiner-method Man page
dim,DelayedArray-method Man page
dim,RleArraySeed-method Man page
dim,SeedBinder-method Man page
dim,arrayRealizationSink-method Man page
dim<-,DelayedArray-method Man page
dimnames,ConformableSeedCombiner-method Man page
dimnames,DelayedArray-method Man page
dimnames,RleArraySeed-method Man page
dimnames,SeedBinder-method Man page
dimnames<-,DelayedArray-method Man page
downgrade_to_DelayedArray_or_DelayedMatrix Source code
drop,DelayedArray-method Man page
end,ArrayViewport-method Man page
execute_delayed_ops Source code
expand_Nindex_RangeNSBS Source code
extract_DataFrame_slice Source code
extract_DataFrame_slice0 Source code
extract_Nindex_from_syscall Source code
extract_array Man page
extract_array,ANY-method Man page
extract_array,ChunkedRleArraySeed-method Man page
extract_array,ConformableSeedCombiner-method Man page
extract_array,DataFrame-method Man page
extract_array,SeedBinder-method Man page
extract_array,SolidRleArraySeed-method Man page
extract_array,array-method Man page
extract_array,data.frame-method Man page
extract_array_from_ChunkedRleArraySeed Source code
extract_array_from_ConformableSeedCombiner Source code
extract_array_from_SeedBinder Source code
extract_array_from_SolidRleArraySeed Source code
extract_block Source code
extract_data_frame_slice Source code
extract_data_frame_slice0 Source code
fill_DelayedArray_with_value Source code
fix_type Source code
format_as_character_matrix Source code
format_as_character_vector Source code
from_DataFrame_to_RleMatrix Source code
from_DelayedArray_to_array Source code
from_DelayedArray_to_matrix Source code
from_DelayedMatrix_to_dgCMatrix Source code
from_RleList_to_RleMatrix Source code
from_RleMatrix_to_DataFrame Source code
from_RleMatrix_to_RleList Source code
from_linear_to_multi_subscript Source code
getRealizationBackend Man page Source code
get_ArrayArbitraryGrid_max_spacings Source code
get_ArrayArbitraryGrid_spacings_along Source code
get_ArrayRegularGrid_dim Source code
get_ArrayRegularGrid_spacings_along Source code
get_ConformableSeedCombiner_dim Source code
get_ConformableSeedCombiner_dimnames Source code
get_DataFrame_type Source code
get_DelayedArray_dim Source code
get_DelayedArray_dim_before_transpose Source code
get_DelayedArray_dimnames Source code
get_DelayedArray_dimnames_before_transpose Source code
get_DelayedArray_element Source code
get_DelayedArray_names Source code
get_Nindex_lengths Source code
get_Nindex_names_along Source code
get_REALIZATION_SINK_CONSTRUCTOR Source code
get_SeedBinder_dim Source code
get_SeedBinder_dimnames Source code
get_ans_type Source code
get_arrayRealizationSink_result Source code
get_chunk Source code
get_chunk_lens Source code
get_data_frame_type Source code
get_data_length_from_breakpoints Source code
get_dims_to_bind Source code
get_max_block_length Source code
get_max_spacings_for_hypercube_blocks Source code
get_max_spacings_for_linear_blocks Source code
get_part_index Source code
get_realization_sink_constructor Source code
get_rev_index Source code
get_verbose_block_processing Source code
is.finite,DelayedArray-method Man page
is.infinite,DelayedArray-method Man page
is.na,DelayedArray-method Man page
is.nan,DelayedArray-method Man page
isEmpty,DelayedArray-method Man page
isLinear Man page
isLinear,ArrayGrid-method Man page
isLinear,ArrayViewport-method Man page
is_pristine Source code
length,Array-method Man page
lengths,ArrayGrid-method Man page
load_BACKEND_package Source code
makeNindexFromArrayViewport Man page Source code
make_string_from_ArrayViewport Source code
make_subscripts_from_Nindex Source code
map_new_to_old_dim Source code
matrixClass Man page
matrixClass,DelayedArray-method Man page
matrixClass,RleArray-method Man page
mean,DelayedArray-method Man page
mean.DelayedArray Man page Source code
names,DelayedArray-method Man page
names<-,DelayedArray-method Man page
nchar,DelayedArray-method Man page
new_ConformableSeedCombiner Source code
new_DelayedArray Source code
new_SeedBinder Source code
normalize_dim_replacement_value Source code
normalize_dimnames_replacement_value Source code
normarg_dims Source code
ntertwine_blocks Source code
objects_are_conformable_arrays Source code
onLoad Source code
pmax2 Man page
pmax2,ANY,ANY-method Man page
pmax2,DelayedArray,DelayedArray-method Man page
pmax2,DelayedArray,vector-method Man page
pmax2,vector,DelayedArray-method Man page
pmin2 Man page
pmin2,ANY,ANY-method Man page
pmin2,DelayedArray,DelayedArray-method Man page
pmin2,DelayedArray,vector-method Man page
pmin2,vector,DelayedArray-method Man page
prepare_1D_array_sample Source code
prepare_2D_array_sample Source code
print_1D_array_data Source code
print_2D_array_data Source code
print_2D_slices Source code
print_array_data Source code
print_nD_array_data Source code
ranges,ArrayViewport-method Man page
rbind Man page
rbind,DelayedArray-method Man page
rbind,DelayedMatrix-method Man page
realize Man page
realize,ANY-method Man page
reduce_array_dimensions Source code
refdim Man page
refdim,ArrayArbitraryGrid-method Man page
refdim,ArrayRegularGrid-method Man page
refdim,ArrayViewport-method Man page
register_delayed_op Source code
remove_pristine_DelayedArray_wrapping Source code
replace_block Source code
replace_by_Nindex Source code
round,DelayedArray-method Man page
rowMaxs Man page
rowMaxs,DelayedMatrix-method Man page
rowMeans Man page
rowMeans,DelayedMatrix-method Man page
rowMins Man page
rowMins,DelayedMatrix-method Man page
rowRanges Man page
rowRanges,DelayedMatrix-method Man page
rowRanges.useAsDefault Source code
rowSums Man page
rowSums,DelayedMatrix-method Man page
rsplit_2D_array_data Source code
seed Man page
seed,DelayedArray-method Man page
setRealizationBackend Man page Source code
set_DelayedArray_dim Source code
set_DelayedArray_dimnames Source code
set_DelayedArray_names Source code
set_arrayRealizationSink_result Source code
set_chunk Source code
set_dim Source code
set_dimnames Source code
set_verbose_block_processing Source code
show,ArrayGrid-method Man page
show,ArrayViewport-method Man page
show,DelayedArray-method Man page
show_compact_array Source code
signif,DelayedArray-method Man page
simple_abind Source code
simplify_apply_answer Source code
split,DelayedArray,ANY-method Man page
split.DelayedArray Man page Source code
splitAsList,DelayedArray-method Man page
split_1D_array_names Source code
split_2D_array_data Source code
split_array_in_linear_blocks Source code
split_colnames Source code
split_part_index Source code
split_rownames Source code
start,ArrayViewport-method Man page
straighten Source code
straighten_index Source code
subassign_DelayedArray Source code
subset_DelayedArray Source code
subset_DelayedArray_by_1Dindex Source code
subset_DelayedArray_by_Nindex Source code
subset_by_Nindex Source code
subset_delayed_op_args Source code
subset_delayed_ops_args Source code
supportedRealizationBackends Man page Source code
t,DelayedArray-method Man page
test Source code
to_linear_index Source code
tolower,DelayedArray-method Man page
toupper,DelayedArray-method Man page
type Man page
type,DelayedArray-method Man page
type,array-method Man page
unsplit_array_from_linear_blocks Source code
valid_tickmarks Source code
validate_ArrayArbitraryGrid Source code
validate_ArrayRegularGrid Source code
validate_ArrayViewport Source code
validate_ChunkedRleArraySeed Source code
validate_ConformableSeedCombiner Source code
validate_DelayedArray Source code
validate_DelayedMatrix Source code
validate_RleArray Source code
validate_RleArraySeed Source code
validate_RleRealizationSink Source code
validate_SeedBinder Source code
validate_SolidRleArraySeed Source code
validate_dim_slot Source code
validate_dimnames_slot Source code
validate_ranges_slot Source code
which,DelayedArray-method Man page
width,ArrayViewport-method Man page
wmsg2 Source code
write_array_to_sink Man page Source code
write_block_to_sink Man page
write_block_to_sink,RleRealizationSink-method Man page
write_block_to_sink,arrayRealizationSink-method Man page
Bioconductor/DelayedArray documentation built on Dec. 7, 2017, 2:03 p.m.