API for Bioconductor/DelayedArray
Delayed operations on array-like objects

Global functions
!,DelayedArray-method Man page
+,DelayedArray,missing-method Man page
-,DelayedArray,missing-method Man page
ArbitraryArrayGrid Man page Source code
ArbitraryArrayGrid-class Man page
Array Man page
Array-class Man page
ArrayGrid Man page
ArrayGrid-class Man page
ArrayViewport Man page Source code
ArrayViewport-class Man page
BLOCK_Summary Source code
BLOCK_anyNA Source code
BLOCK_extract_vector Source code
BLOCK_matrix_mult Source code
BLOCK_mean Source code
BLOCK_mult_by_left_matrix Source code
BLOCK_range Source code
BLOCK_rowMeans Source code
BLOCK_rowRanges Source code
BLOCK_row_summary Source code
BLOCK_table Source code
BLOCK_unique Source code
BLOCK_which Source code
ChunkedRleArraySeed-class Man page
DelayedAbind_summary Source code
DelayedAperm Man page
DelayedAperm-class Man page
DelayedAperm_summary Source code
DelayedArray Man page
DelayedArray,ANY-method Man page
DelayedArray,DelayedArray-method Man page
DelayedArray,DelayedOp-method Man page
DelayedArray,RleArraySeed-method Man page
DelayedArray-class Man page
DelayedArray-stats Man page
DelayedArray-utils Man page
DelayedArray_Math2 Source code
DelayedArray_Ops Source code
DelayedArray_Ops_COMBINE_seeds Source code
DelayedArray_Ops_with_left_vector Source code
DelayedArray_Ops_with_right_vector Source code
DelayedArray_acbind Source code
DelayedArray_arbind Source code
DelayedDimnames Man page
DelayedDimnames-class Man page
DelayedDimnames_summary Source code
DelayedMatrix Man page
DelayedMatrix-class Man page
DelayedMatrix-stats Man page
DelayedNaryIsoOp_summary Source code
DelayedNaryOp Man page
DelayedNaryOp-class Man page
DelayedOp Man page
DelayedOp-class Man page
DelayedOp_summary Source code
DelayedSubset Man page
DelayedSubset-class Man page
DelayedSubset_summary Source code
DelayedUnaryIsoOp Man page
DelayedUnaryIsoOp-class Man page
DelayedUnaryIsoOp_summary Source code
DelayedUnaryOp Man page
DelayedUnaryOp-class Man page
RealizationSink Man page Source code
RealizationSink-class Man page
RegularArrayGrid Man page Source code
RegularArrayGrid-class Man page
RleArray Man page Source code
RleArray-class Man page
RleArraySeed Source code
RleArraySeed-class Man page
RleMatrix Man page
RleMatrix-class Man page
RleRealizationSink Source code
RleRealizationSink-class Man page
SolidRleArraySeed-class Man page
Summary_DelayedArray Source code
[,DelayedArray-method Man page
[<-,DelayedArray-method Man page
[[,Array-method Man page
[[,DelayedArray-method Man page
\%*\% Man page
\%*\%,DelayedMatrix,DelayedMatrix-method Man page
\%*\%,DelayedMatrix,matrix-method Man page
\%*\%,matrix,DelayedMatrix-method Man page
acbind Man page
acbind,DelayedArray-method Man page
acbind,array-method Man page
anyNA,DelayedArray-method Man page
anyNA_DelayedArray Source code
aperm Man page
aperm,ArbitraryArrayGrid-method Man page
aperm,DelayedArray-method Man page
aperm,RegularArrayGrid-method Man page
aperm.ArbitraryArrayGrid Man page Source code
aperm.DelayedArray Man page Source code
aperm.RegularArrayGrid Man page Source code
append_Rle_to_sink Source code
append_chunk Source code
apply Man page
apply,DelayedArray-method Man page
apply_DelayedArray Source code
arbind Man page
arbind,DelayedArray-method Man page
arbind,array-method Man page
arrayInd2 Source code
arrayRealizationSink Source code
arrayRealizationSink-class Man page
array_as_one_line_summary Source code
as.array,Array-method Man page
as.array.Array Man page Source code
as.character,Array-method Man page
as.character,ArrayGrid-method Man page
as.character.Array Man page Source code
as.character.ArrayGrid Man page Source code Source code
as.complex,Array-method Man page
as.complex.Array Man page Source code
as.data.frame,Array-method Man page
as.data.frame.Array Man page Source code
as.integer,Array-method Man page
as.integer.Array Man page Source code
as.logical,Array-method Man page
as.logical.Array Man page Source code
as.matrix,Array-method Man page
as.matrix.Array Man page Source code
as.numeric,Array-method Man page
as.numeric.Array Man page Source code
as.raw,Array-method Man page
as.raw.Array Man page Source code
as.vector,Array-method Man page
as.vector.Array Man page Source code
as_RleArray Source code
bind arrays Man page
bind-arrays Man page
bindROWS,DelayedArray-method Man page
blockApply Man page Source code
blockGrid Man page Source code
blockReduce Man page Source code
block_APPLY Source code
block_processing Man page
breakpoints2offsets Source code
c,DelayedArray-method Man page
capped_volume_boxes Man page
cbind Man page
cbind,DelayedArray-method Man page
check_DelayedArray_internals Source code
check_and_combine_dims Source code
check_dims Source code
check_returned_array Source code
check_rows_cols Source code
chunkGrid Man page
chunkGrid,ANY-method Man page
chunkdim Man page
chunkdim,ANY-method Man page
chunkdim,DelayedAperm-method Man page
chunkdim,DelayedSubset-method Man page
chunkdim,DelayedUnaryOp-method Man page
class:ArbitraryArrayGrid Man page
class:Array Man page
class:ArrayGrid Man page
class:ArrayViewport Man page
class:ChunkedRleArraySeed Man page
class:DelayedAperm Man page
class:DelayedArray Man page
class:DelayedDimnames Man page
class:DelayedMatrix Man page
class:DelayedNaryOp Man page
class:DelayedOp Man page
class:DelayedSubset Man page
class:DelayedUnaryIsoOp Man page
class:DelayedUnaryOp Man page
class:RealizationSink Man page
class:RegularArrayGrid Man page
class:RleArray Man page
class:RleArraySeed Man page
class:RleMatrix Man page
class:RleRealizationSink Man page
class:SolidRleArraySeed Man page
class:arrayRealizationSink Man page
class:integer_OR_NULL Man page
close,RealizationSink-method Man page
coerce,ANY,RleArray-method Man page
coerce,ANY,RleMatrix-method Man page
coerce,ChunkedRleArraySeed,SolidRleArraySeed-method Man page
coerce,DataFrame,RleArray-method Man page
coerce,DelayedArray,DelayedMatrix-method Man page
coerce,DelayedArray,RleArray-method Man page
coerce,DelayedMatrix,DataFrame-method Man page
coerce,DelayedMatrix,DelayedArray-method Man page
coerce,DelayedMatrix,RleMatrix-method Man page
coerce,DelayedMatrix,dgCMatrix-method Man page
coerce,DelayedMatrix,sparseMatrix-method Man page
coerce,RleArray,Rle-method Man page
coerce,RleArray,RleMatrix-method Man page
coerce,RleList,RleArray-method Man page
coerce,RleMatrix,DataFrame-method Man page
coerce,RleMatrix,RleList-method Man page
coerce,RleRealizationSink,ChunkedRleArraySeed-method Man page
coerce,RleRealizationSink,DelayedArray-method Man page
coerce,RleRealizationSink,Rle-method Man page
coerce,RleRealizationSink,RleArray-method Man page
coerce,SolidRleArraySeed,Rle-method Man page
coerce,arrayRealizationSink,DelayedArray-method Man page
colGrid Man page Source code
colMaxs Man page
colMaxs,DelayedMatrix-method Man page
colMaxs_DelayedMatrix Source code
colMeans Man page
colMeans,DelayedMatrix-method Man page
colMeans_DelayedMatrix Source code
colMins Man page
colMins,DelayedMatrix-method Man page
colMins_DelayedMatrix Source code
colRanges Man page
colRanges,DelayedMatrix-method Man page
colRanges_DelayedMatrix Source code
colSums Man page
colSums,DelayedMatrix-method Man page
colSums_DelayedMatrix Source code
colblock_APPLY Source code
collect_objects Source code
combine_array_objects Source code
combine_dimnames Source code
combine_dimnames_along Source code
combine_dims_along Source code
combine_names Source code
contact_author_msg Source code
contentIsPristine Man page Source code
csplit_2Darray_data Source code
currentBlockId Man page Source code
currentViewport Man page Source code
dbinom Man page
dbinom,DelayedArray-method Man page
dim,ArbitraryArrayGrid-method Man page
dim,ArrayViewport-method Man page
dim,DelayedAbind-method Man page
dim,DelayedAperm-method Man page
dim,DelayedArray-method Man page
dim,DelayedNaryIsoOp-method Man page
dim,DelayedSubset-method Man page
dim,DelayedUnaryOp-method Man page
dim,RegularArrayGrid-method Man page
dim,RleArraySeed-method Man page
dim,arrayRealizationSink-method Man page
dim<-,DelayedArray-method Man page
dimnames,DelayedAbind-method Man page
dimnames,DelayedAperm-method Man page
dimnames,DelayedArray-method Man page
dimnames,DelayedDimnames-method Man page
dimnames,DelayedNaryIsoOp-method Man page
dimnames,DelayedSubset-method Man page
dimnames,DelayedUnaryOp-method Man page
dimnames,RleArraySeed-method Man page
dimnames<-,DelayedArray-method Man page
dims Man page
dims,ArrayGrid-method Man page
dlogis Man page
dlogis,DelayedArray-method Man page
dnorm Man page
dnorm,DelayedArray-method Man page
downsample Man page
downsample,ArbitraryArrayGrid-method Man page
downsample,RegularArrayGrid-method Man page
dpois Man page
dpois,DelayedArray-method Man page
drop,DelayedArray-method Man page
effectiveGrid Man page Source code
end,ArrayViewport-method Man page
expand_Nindex_RangeNSBS Source code
extract_DataFrame_slice Source code
extract_DataFrame_slice0 Source code
extract_Nindex_from_syscall Source code
extract_and_stitch_four_matrices Source code
extract_and_stitch_two_1Darrays Source code
extract_and_stitch_two_matrices_by_col Source code
extract_and_stitch_two_matrices_by_row Source code
extract_array Man page
extract_array,ANY-method Man page
extract_array,ChunkedRleArraySeed-method Man page
extract_array,DataFrame-method Man page
extract_array,DelayedAbind-method Man page
extract_array,DelayedAperm-method Man page
extract_array,DelayedArray-method Man page
extract_array,DelayedNaryIsoOp-method Man page
extract_array,DelayedSubset-method Man page
extract_array,DelayedUnaryIsoOp-method Man page
extract_array,DelayedUnaryOp-method Man page
extract_array,SolidRleArraySeed-method Man page
extract_array,array-method Man page
extract_array,data.frame-method Man page
extract_array_by_Nindex Source code
extract_array_element Source code
extract_array_from_ChunkedRleArraySeed Source code
extract_array_from_DelayedAbind Source code
extract_array_from_DelayedAperm Source code
extract_array_from_DelayedSubset Source code
extract_array_from_SolidRleArraySeed Source code
extract_data_frame_slice Source code
extract_data_frame_slice0 Source code
extract_empty_array Source code
extract_four_matrices Source code
extract_two_1Darrays Source code
extract_two_matrices_by_col Source code
extract_two_matrices_by_row Source code
fill_DelayedArray_with_value Source code
format2 Source code
format_as_character_matrix Source code
format_as_character_vector Source code
from_Array_to_array Source code
from_Array_to_matrix Source code
from_DataFrame_to_RleMatrix Source code
from_DelayedMatrix_to_dgCMatrix Source code
from_RleList_to_RleMatrix Source code
from_RleMatrix_to_DataFrame Source code
from_RleMatrix_to_RleList Source code
from_internals_v0_to_v2 Source code
from_internals_v1_to_v2 Source code
getDefaultBlockLength Man page Source code
getDefaultBlockShape Man page Source code
getDefaultBlockSize Man page Source code
getDefaultGridMaker Man page Source code
getRealizationBackend Man page Source code
get_ArbitraryArrayGrid_max_spacings Source code
get_ArbitraryArrayGrid_maxlength Source code
get_ArbitraryArrayGrid_spacings_along Source code
get_DataFrame_type Source code
get_DelayedAbind_dim Source code
get_DelayedAbind_dimnames Source code
get_DelayedAperm_chunkdim Source code
get_DelayedAperm_dim Source code
get_DelayedAperm_dimnames Source code
get_DelayedArray_internals_version Source code
get_DelayedArray_names Source code
get_DelayedArray_pkgversion Source code
get_DelayedDimnames_dimnames Source code
get_DelayedSubset_chunkdim Source code
get_DelayedSubset_dim Source code
get_Nindex_lengths Source code
get_REALIZATION_SINK_CONSTRUCTOR Source code
get_RegularArrayGrid_dim Source code
get_RegularArrayGrid_maxlength Source code
get_RegularArrayGrid_spacings_along Source code
get_ans_type Source code
get_arrayRealizationSink_result Source code
get_chunk Source code
get_chunk_lens Source code
get_data_frame_type Source code
get_data_length_from_breakpoints Source code
get_default_nrow Source code
get_dims_to_bind Source code
get_part_index Source code
get_pkgversion_from_internals_version Source code
get_realization_sink_constructor Source code
get_rev_index Source code
get_type_size Man page Source code
get_verbose_block_processing Source code
grepl,ANY,DelayedArray-method Man page
gsub,ANY,ANY,DelayedArray-method Man page
integer_OR_NULL Man page
integer_OR_NULL-class Man page
is.finite,DelayedArray-method Man page
is.infinite,DelayedArray-method Man page
is.na,DelayedArray-method Man page
is.nan,DelayedArray-method Man page
isEmpty,Array-method Man page
isLinear Man page
isLinear,ArrayGrid-method Man page
isLinear,ArrayViewport-method Man page
isNoOp Man page
isNoOp,DelayedAperm-method Man page
isNoOp,DelayedDimnames-method Man page
isNoOp,DelayedSubset-method Man page
is_pristine Source code
length,Array-method Man page
lengths,ArrayGrid-method Man page
lengths,DelayedArray-method Man page
linearInd Man page Source code
load_BACKEND_package Source code
major_minor_as_list Source code
makeCappedVolumeBox Man page Source code
makeNindexFromArrayViewport Man page Source code
makeRegularArrayGridOfCappedLengthViewports Man page Source code
make_1Darray_names Source code
make_capped_volume_FDGF_box Source code
make_capped_volume_LDGF_box Source code
make_capped_volume_hypercube_box Source code
make_capped_volume_scale_box Source code
make_colnames Source code
make_rownames Source code
make_string_from_ArrayViewport Source code
make_subscripts_from_Nindex Source code
mapToGrid Man page
mapToGrid,ArbitraryArrayGrid-method Man page
mapToGrid,RegularArrayGrid-method Man page
mapToRef Man page
mapToRef,ArbitraryArrayGrid-method Man page
mapToRef,RegularArrayGrid-method Man page
map_new_to_old_dim Source code
matrixClass Man page
matrixClass,DelayedArray-method Man page
matrixClass,RleArray-method Man page
maxlength Man page
maxlength,ANY-method Man page
maxlength,ArbitraryArrayGrid-method Man page
maxlength,RegularArrayGrid-method Man page
mean Man page
mean,DelayedArray-method Man page
mean.DelayedArray Man page Source code
msg_for_old_internals Source code
names,DelayedArray-method Man page
names<-,DelayedArray-method Man page
nchar,DelayedArray-method Man page
netSubsetAndAperm Man page
netSubsetAndAperm,ANY-method Man page
netSubsetAndAperm,DelayedArray-method Man page
new_DelayedAbind Source code
new_DelayedAperm Source code
new_DelayedArray Man page Source code
new_DelayedDimnames Source code
new_DelayedNaryIsoOp Source code
new_DelayedSubset Source code
new_DelayedUnaryIsoOp Source code
normalizeSingleBracketSubscript2 Source code
normalize_dim_replacement_value Source code
normalize_dimnames Source code
normalize_seed_replacement_value Source code
normarg_Lalong_or_Ralong Source code
normarg_Ops_vector_arg Source code
normarg_aind Source code
normarg_block.length Source code
normarg_block.shape Source code
normarg_chunk.grid Source code
normarg_dim Source code
normarg_grid Source code
normarg_incremental Source code
normarg_ind Source code
normarg_perm Source code
normarg_ratio Source code
normargs_major_minor Source code
nseed Man page
nseed,ANY-method Man page
ntertwine_blocks Source code
objects_are_conformable_arrays Source code
onLoad Source code
onUnload Source code
path Man page
path,DelayedArray-method Man page
path<-,DelayedArray-method Man page
pbinom Man page
pbinom,DelayedArray-method Man page
plogis Man page
plogis,DelayedArray-method Man page
pmax2 Man page
pmax2,ANY,ANY-method Man page
pmax2,DelayedArray,DelayedArray-method Man page
pmax2,DelayedArray,vector-method Man page
pmax2,vector,DelayedArray-method Man page
pmin2 Man page
pmin2,ANY,ANY-method Man page
pmin2,DelayedArray,DelayedArray-method Man page
pmin2,DelayedArray,vector-method Man page
pmin2,vector,DelayedArray-method Man page
pnorm Man page
pnorm,DelayedArray-method Man page
ppois Man page
ppois,DelayedArray-method Man page
prepare_1Darray_sample Source code
prepare_2Darray_sample Source code
print_1Darray_data Source code
print_2D_slices Source code
print_2Darray_data Source code
print_array_data Source code
print_nDarray_data Source code
qbinom Man page
qbinom,DelayedArray-method Man page
qlogis Man page
qlogis,DelayedArray-method Man page
qnorm Man page
qnorm,DelayedArray-method Man page
qpois Man page
qpois,DelayedArray-method Man page
range Man page
range,DelayedArray-method Man page
range.DelayedArray Man page Source code
ranges,ArrayViewport-method Man page
rbind Man page
rbind,DelayedArray-method Man page
read_block Man page
read_block,ANY-method Man page
realize Man page
realize,ANY-method Man page
rec_showtree Source code
reduce_array_dimensions Source code
refdim Man page
refdim,ArbitraryArrayGrid-method Man page
refdim,ArrayViewport-method Man page
refdim,RegularArrayGrid-method Man page
remove_iso_ops Source code
replace_by_Nindex Source code
round,DelayedArray-method Man page
rowGrid Man page Source code
rowMaxs Man page
rowMaxs,DelayedMatrix-method Man page
rowMaxs_DelayedMatrix Source code
rowMeans Man page
rowMeans,DelayedMatrix-method Man page
rowMeans_DelayedMatrix Source code
rowMins Man page
rowMins,DelayedMatrix-method Man page
rowMins_DelayedMatrix Source code
rowRanges Man page
rowRanges,DelayedMatrix-method Man page
rowRanges.useAsDefault Source code
rowRanges_DelayedMatrix Source code
rowSums Man page
rowSums,DelayedMatrix-method Man page
rowSums_DelayedMatrix Source code
rsplit_2Darray_data Source code
seed Man page
seed,DelayedOp-method Man page
seed<- Man page
seed<-,DelayedOp-method Man page
seq2 Source code
setDefaultBlockShape Man page Source code
setDefaultBlockSize Man page Source code
setDefaultGridMaker Man page Source code
setRealizationBackend Man page Source code
set_DelayedArray_dim Source code
set_DelayedArray_names Source code
set_arrayRealizationSink_result Source code
set_chunk Source code
set_dim Source code
set_dimnames Source code
set_verbose_block_processing Source code
show,ArrayGrid-method Man page
show,ArrayViewport-method Man page
show,DelayedArray-method Man page
show,DelayedOp-method Man page
showAsCell,Array-method Man page
showAsCell_array_like Source code
show_compact_array Source code
showtree Man page Source code
signif,DelayedArray-method Man page
simple_abind Source code
simplify Man page
simplify,ANY-method Man page
simplify,DelayedAperm-method Man page
simplify,DelayedArray-method Man page
simplify,DelayedDimnames-method Man page
simplify,DelayedSubset-method Man page
simplify,DelayedUnaryIsoOp-method Man page
simplify_NULL_dimnames Source code
simplify_apply_answer Source code
split,DelayedArray,ANY-method Man page
split.DelayedArray Man page Source code
splitAsList,DelayedArray-method Man page
split_2Darray_data Source code
split_part_index Source code
start,ArrayViewport-method Man page
stash_DelayedAbind Source code
stash_DelayedAperm Source code
stash_DelayedDimnames Source code
stash_DelayedSubset Source code
stash_DelayedUnaryIsoOp Source code
sub,ANY,ANY,DelayedArray-method Man page
subassign_DelayedArray Source code
subset_DelayedArray Source code
subset_DelayedSubset Source code
subset_args Source code
subset_by_Nindex Source code
subset_dimnames_by_Nindex Source code
summary,DelayedAbind-method Man page
summary,DelayedAperm-method Man page
summary,DelayedDimnames-method Man page
summary,DelayedNaryIsoOp-method Man page
summary,DelayedOp-method Man page
summary,DelayedSubset-method Man page
summary,DelayedUnaryIsoOp-method Man page
summary.DelayedAbind Man page Source code
summary.DelayedAperm Man page Source code
summary.DelayedDimnames Man page Source code
summary.DelayedNaryIsoOp Man page Source code
summary.DelayedOp Man page Source code
summary.DelayedSubset Man page Source code
summary.DelayedUnaryIsoOp Man page Source code
supportedRealizationBackends Man page Source code
sweep Man page
sweep,DelayedArray-method Man page
t Man page
t,ArrayGrid-method Man page
t,DelayedMatrix-method Man page
t.ArrayGrid Man page Source code
t.DelayedMatrix Man page Source code
table Man page
table,DelayedArray-method Man page
table_DelayedArray Source code
test Source code
to_linear_index Source code
tolower,DelayedArray-method Man page
toupper,DelayedArray-method Man page
type Man page
type,ANY-method Man page
type,array-method Man page
unique Man page
unique,DelayedArray-method Man page
unique.DelayedArray Man page Source code
updateObject,ConformableSeedCombiner-method Man page
updateObject,DelayedArray-method Man page
updateObject,DelayedOp-method Man page
updateObject,SeedBinder-method Man page
updateObject,SeedDimPicker-method Man page
updateObject_DelayedArray Source code
update_delayed_ops Source code
valid_tickmarks Source code
validate_ArbitraryArrayGrid Source code
validate_ArrayViewport Source code
validate_ChunkedRleArraySeed Source code
validate_DelayedAbind Source code
validate_DelayedAperm Source code
validate_DelayedArray Source code
validate_DelayedDimnames Source code
validate_DelayedMatrix Source code
validate_DelayedNaryIsoOp Source code
validate_DelayedNaryOp Source code
validate_DelayedSubset Source code
validate_DelayedUnaryOp Source code
validate_RegularArrayGrid Source code
validate_RleArray Source code
validate_RleArraySeed Source code
validate_RleRealizationSink Source code
validate_SolidRleArraySeed Source code
validate_dim_slot Source code
validate_dimnames_slot Source code
validate_ranges_slot Source code
which,DelayedArray-method Man page
which_DelayedArray Source code
width,ArrayViewport-method Man page
wmsg2 Source code
wrap_subscripts Source code
write_array_to_sink Man page Source code
write_block Man page
write_block,ANY-method Man page
write_block,RleRealizationSink-method Man page
write_block,arrayRealizationSink-method Man page
Bioconductor/DelayedArray documentation built on Aug. 11, 2018, 2:44 a.m.