Bioconductor/ShortRead: FASTQ input and manipulation

This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.

Getting started

Package details

AuthorMartin Morgan, Michael Lawrence, Simon Anders
Bioconductor views DataImport QualityControl Sequencing
MaintainerBioconductor Package Maintainer <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Bioconductor/ShortRead documentation built on Nov. 1, 2018, 5:16 p.m.