API for Bioconductor/VariantExperiment
A RangedSummarizedExperiment Container for VCF/GDS Data with

Global functions
VariantExperiment Man page Source code
VariantExperiment-class Man page
VariantExperiment-methods Man page
VariantExperiment-package Man page
altDosage Source code
altDosage,VariantExperiment-method Man page
colData_gdsdata Source code
countSingletons,VariantExperiment-method Man page
create_dir Source code
ctSingleton Source code
doCompatibleFunction Source code
gdsfile,VariantExperiment-method Man page
granges_gdsdata Source code
heterozygosity Source code
heterozygosity,VariantExperiment-method Man page
homozygosity Source code
homozygosity,VariantExperiment-method Man page
hwe Source code
hwe,VariantExperiment-method Man page
inbreedCoeff,VariantExperiment-method Man page
isSNV,VariantExperiment-method Man page
isVariant,VariantExperiment-method Man page
loadVariantExperiment Man page Source code
makeSummarizedExperimentFromGDS Man page Source code
makeSummarizedExperimentFromVCF Man page Source code
meanBySample Source code
meanBySample,VariantExperiment-method Man page
nbreedCoeff Source code
nfo_seqgds Source code
nitiate_seqgds Source code
nitiate_snpgds Source code
pca Source code
pca,VariantExperiment-method Man page
permDim Source code
refDosage Source code
refDosage,VariantExperiment-method Man page
rowRanges_gdsdata Source code
sSNV Source code
sVariant Source code
sampnode_gdsdata_ondisk Source code
saveGDSMaybe Source code
saveVariantExperiment Man page Source code
seqAlleleCount Man page Source code
seqAlleleCount,VariantExperiment-method Man page
seqAlleleFreq Man page Source code
seqAlleleFreq,VariantExperiment-method Man page
seqMissing Man page Source code
seqMissing,VariantExperiment-method Man page
seqNumAllele Source code
seqNumAllele,VariantExperiment-method Man page
showAvailable Man page Source code
stop_if_bad_dir Source code
titv Source code
titv,VariantExperiment-method Man page
titv,variantExperiment-method Man page
validate_VariantExperiment Source code
varnode_gdsdata_ondisk Source code
varnode_seqgds_inmem Source code
varnode_snpgds_inmem Source code
write_ve_as_gds Source code
write_ve_as_newve Source code
write_vedata_as_gdsnode Source code
Bioconductor/VariantExperiment documentation built on Sept. 8, 2018, 3:37 a.m.