API for Bioconductor/VariantExperiment
GDS back-end data for DelayedArray to represent gdsfmt using standard SummarizedExperiment metaphor

Global functions
.VariantExperiment Man page
VariantExperiment Man page Man page Source code
VariantExperiment-class Man page
VariantExperiment-package Man page
altDosage Source code
colData_gdsdata Source code
create_dir Source code
ctSingleton Source code
doCompatibleFunction Source code
gdsfile,VariantExperiment-method Man page
granges_gdsdata Source code
heterozygosity Source code
homozygosity Source code
hwe Source code
loadGDSSummarizedExperiment Man page Source code
makeSummarizedExperimentFromGDS Man page Source code
meanBySample Source code
missingGenotypeRate Source code
nbreedCoeff Source code
nfo_seqgds Source code
nitiate_seqgds Source code
nitiate_snpgds Source code
pca Source code
refDosage Source code
rowRanges_gdsdata Source code
sSNV Source code
sVariant Source code
sampnode_gdsdata_ondisk Source code
saveGDSMaybe Source code
saveGDSSummarizedExperiment Man page Source code
seqAlleleCount Source code
seqAlleleFreq Source code
seqMissing Source code
seqNumAllele Source code
showAvailable Man page Source code
stop_if_bad_dir Source code
titv Source code
validate_VariantExperiment Source code
varnode_gdsdata_ondisk Source code
varnode_seqgds_inmem Source code
varnode_snpgds_inmem Source code
write_se_as_gds Source code
write_se_as_newse Source code
write_sedata_as_gdsnode Source code
Bioconductor/VariantExperiment documentation built on June 1, 2018, 12:07 p.m.