API for Bioconductor/VariantExperiment
GDS back-end data for DelayedArray to represent gdsfmt using standard SummarizedExperiment metaphor

Global functions
GDSArray Man page Source code
GDSArraySeed Man page Source code
GDSArraySeed-class Man page
colData_gdsdata Source code
create_dir Source code
dim,GDSArraySeed-method Man page
dimnames,GDSArraySeed-method Man page
extract_array_from_GDSArraySeed Source code
gdsfile Man page
gdsfile,DelayedArray-method Man page
gdsfile,GDSArray-method Man page
gdsfile,GDSArraySeed-method Man page
gdsfile,SummarizedExperiment-method Man page
get_gdsdata_arrayNodes Source code
get_gdsdata_dim Source code
get_gdsdata_dimnames Source code
get_gdsdata_fileFormat Source code
granges_gdsdata Source code
loadGDSSummarizedExperiment Man page Source code
makeSummarizedExperimentFromGDS Man page Source code
nfo_seqgds Source code
nitiate_seqgds Source code
nitiate_snpgds Source code
read_gdsdata_first_val Source code
read_gdsdata_sampleInCol Source code
rowRanges_gdsdata Source code
sampnode_gdsdata_ondisk Source code
saveGDSSummarizedExperiment Man page Source code
showAvailable Man page Source code
stop_if_bad_dir Source code
validate_GDSArray Source code
varnode_gdsdata_ondisk Source code
varnode_seqgds_inmem Source code
varnode_snpgds_inmem Source code
write_se_as_gds Source code
write_se_as_newse Source code
write_sedata_as_gdsnode Source code
Bioconductor/VariantExperiment documentation built on Jan. 15, 2018, 10:11 a.m.