Files in CBIIT/rcellminer

rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS

R/.Rapp.history

R/AllGenerics.R R/DrugData-class.R R/DrugData-methods.R R/Drug_MOA_Key.R R/MolData-class.R R/MolData-methods.R R/crossCors.R R/dataDocumentation.R R/getActivityRangeStats.R R/getBinaryMutationData.R R/getColumnQuantiles.R R/getDrugActivityData.R R/getDrugActivityRange.R R/getDrugActivityRepeatData.R R/getDrugMoaList.R R/getDrugName.R R/getFeatureDataFromMatList.R R/getMedSenLineActivity.R R/getMinDrugActivityRepeatCor.R R/getMoaStr.R R/getMoaToCompounds.R R/getMolDataMatrices.R R/getMolDataType.R R/getNumDrugActivityRepeats.R R/getNumMissingLines.R R/getRsd.R R/getSmiles.R R/hasMoa.R R/isPublic.R R/loadCellminerPlotInfo.R R/loadNciColorSet.R R/parCorPatternComparison.R R/patternComparison.R R/plotCellMiner.R R/plotCellMiner2D.R R/plotDrugActivityRepeats.R R/plotDrugSets.R R/rcellminer.R R/removeMolDataType.R R/restrictFeatureMat.R R/rowCors.R R/searchForNscs.R R/selectCorrelatedRows.R R/selectCorrelatedRowsFromMatrices.R README.md

data/Drug_MOA_Key.RData

inst/CITATION

inst/extdata/Drug_MOA_Key.txt

inst/extdata/moa230_description_cdb.txt

inst/extdata/updateMOA_keys.R inst/shinyFormulas/server.R inst/shinyFormulas/ui.R

inst/shinyTemplate/config.json

inst/shinyTemplate/functions.R inst/shinyTemplate/genericTabs.R inst/shinyTemplate/server.R inst/shinyTemplate/ui.R inst/shinyTemplate/www/about.md inst/shinyTemplate/www/help.md inst/shinyTutorial/server.R inst/shinyTutorial/ui.R inst/shinyTutorial/www/help.md inst/shinyTutorialHeatmap/server.R inst/shinyTutorialHeatmap/ui.R inst/shinyTutorialHeatmap/www/help.md man/DrugData-class.Rd man/DrugData-eSet-eSet-MIAxE-method.Rd man/DrugData.Rd man/Drug_MOA_Key.Rd man/MolData-class.Rd man/MolData-list-MIAxE-method.Rd man/MolData.Rd man/cmVersion.Rd man/crossCors.Rd man/crossCorsSpearman.Rd man/dot-onAttach.Rd man/dot-onLoad.Rd man/drugDB.Rd man/elNetMolDataNCI60.Rd man/fingerprintList.Rd man/getAct-DrugData-method.Rd man/getAct.Rd man/getActivityRangeStats.Rd man/getAllFeatureData-MolData-method.Rd man/getAllFeatureData.Rd man/getBinaryMutationData.Rd man/getColumnQuantiles.Rd man/getDrugActivityData.Rd man/getDrugActivityRange.Rd man/getDrugActivityRepeatData.Rd man/getDrugMoaList.Rd man/getDrugName.Rd man/getESetList-MolData-method.Rd man/getESetList.Rd man/getFeatureAnnot-DrugData-method.Rd man/getFeatureAnnot-MolData-method.Rd man/getFeatureAnnot.Rd man/getFeatureDataFromMatList.Rd man/getMedSenLineActivity.Rd man/getMinDrugActivityRepeatCor.Rd man/getMoaStr.Rd man/getMoaToCompounds.Rd man/getMolDataMatrices.Rd man/getMolDataType.Rd man/getNumDrugActivityRepeats.Rd man/getNumMissingLines.Rd man/getRepeatAct-DrugData-method.Rd man/getRepeatAct.Rd man/getRsd.Rd man/getSampleData-DrugData-method.Rd man/getSampleData-MolData-method.Rd man/getSampleData.Rd man/getSmiles.Rd man/hasMoa.Rd man/initialize-DrugData-method.Rd man/initialize-MolData-method.Rd man/isPublic.Rd man/loadCellminerPlotInfo.Rd man/loadNciColorSet.Rd man/parCorPatternComparison.Rd man/patternComparison.Rd man/plotCellMiner.Rd man/plotCellMiner2D.Rd man/plotDrugActivityRepeats.Rd man/plotDrugSets.Rd man/removeMolDataType.Rd man/restrictFeatureMat.Rd man/rowCors.Rd man/searchForNscs.Rd man/selectCorrelatedRows.Rd man/selectCorrelatedRowsFromMatrices.Rd man/sub-sub-MolData-method.Rd man/sub-subset-MolData-method.Rd

rcellminer.Rproj

tests/testthat.R tests/testthat/ignore_compareFingerprints.R tests/testthat/ignore_getFingerprintList.R tests/testthat/ignore_passRuleOf5.R tests/testthat/ignore_passRuleOf5FromNsc.R tests/testthat/ignore_plotStructures.R tests/testthat/ignore_plotStructuresFromNscs.R tests/testthat/test_MolPharmTypes.R tests/testthat/test_crossCors.R tests/testthat/test_getActivityRangeStats.R tests/testthat/test_getBinaryMutationData.R tests/testthat/test_getColumnQuantiles.R tests/testthat/test_getDrugActivityData.R tests/testthat/test_getDrugActivityRange.R tests/testthat/test_getDrugActivityRepeatData.R tests/testthat/test_getDrugMoaList.R tests/testthat/test_getDrugName.R tests/testthat/test_getFeatureDataFromMatList.R tests/testthat/test_getMedSenLineActivity.R tests/testthat/test_getMinDrugActivityRepeatCor.R tests/testthat/test_getMoaStr.R tests/testthat/test_getMoaToCompounds.R tests/testthat/test_getMolDataMatrices.R tests/testthat/test_getMolDataType.R tests/testthat/test_getNumDrugActivityRepeats.R tests/testthat/test_getNumMissingLines.R tests/testthat/test_getRsd.R tests/testthat/test_getSmiles.R tests/testthat/test_hasMoa.R tests/testthat/test_isPublic.R tests/testthat/test_loadNciColorSet.R tests/testthat/test_patternComparison.R tests/testthat/test_plotCellMiner.R tests/testthat/test_plotDrugActivityRepeats.R tests/testthat/test_plotDrugSets.R tests/testthat/test_rcellminer.R tests/testthat/test_removeMolDataType.R tests/testthat/test_restrictFeatureMat.R tests/testthat/test_searchForNscs.R tests/testthat/test_selectCorrelatedRows.R tests/testthat/test_selectCorrelatedRowsFromMatrices.R vignettes/rcellminerUsage.R vignettes/rcellminerUsage.Rmd

CBIIT/rcellminer documentation built on July 28, 2021, 8:51 a.m.