In Calvagone/campsis: Generic PK/PD Simulation Platform CAMPSIS

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/"
)

campsis

Requirements

• R package campsismod must be installed beforehand
• Simulation engine must be installed too (rxode2, RxODE or mrgsolve)

Installation

Install the latest stable release using devtools:

devtools::install_github("Calvagone/campsis")

Basic example

Import the campsis package:

library(campsis)

Create your dataset:

ds <- Dataset(50) %>%
  add(Bolus(time=0, amount=1000, ii=12, addl=2)) %>%
  add(Observations(times=seq(0, 36, by=0.5)))

Load your own model or use a built-in model from the library:

model <- model_suite$pk$`2cpt_fo`

Simulate your results with your preferred simulation engine (rxode2, RxODE or mrgsolve at your choice!):

results <- model %>% simulate(dataset=ds, dest="rxode2", seed=1)

Plot your results:

shadedPlot(results, "CONC")

file_vignette <- "vignettes/resources/readme_plot.png"
ggplot2::ggsave(filename=file_vignette, width=8, height=4, dpi=100)

file.copy(file_vignette, "docs/articles/resources/")

Calvagone/campsis documentation built on April 17, 2024, 5:33 a.m.