mergeCGandGCtsv: Merge CG tsv and GC tsv

In CellFateNucOrg/nanodsmf: Analyse nanopore dual enzyme single molecule footprinting data (nanoDSMF)

Description

Merge CG tsv and GC tsv

Usage

mergeCGandGCtsv(tsvCG, tsvGC, genome)

Arguments

tsvCG	A tab serparated values text file where individual CG motifs have been split
tsvGC	A tab serparated values text file where individual GC motifs have been split
genome	A BSgenome, DNAstring or path to fasta file for the genome of interest

Value

A tsv for both motifs with three contexts: HCG, GCH, GCGorCGC

Examples

mergeCGandGCtsv(splitMotifs(MSssI_CpG,"CG"),splitMotifs(MSssI_GpC,"GC"),ttTi5605dna)

CellFateNucOrg/nanodsmf documentation built on July 23, 2020, 4:57 p.m.