Files in CenterForStatistics-UGent/RCM
Fit row-column association models with the negative binomial distribution for the microbiome

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/F_JacCol_constr.R R/F_JacCol_constr_noLab.R R/F_LR_nb.R R/F_LR_nb_Jac.R R/F_NBalphaInfl.R R/F_NBcolInfl.R R/F_NBjacobianAbunds.R R/F_NBjacobianCol.R R/F_NBjacobianLibSizes.R R/F_NBjacobianPsi.R R/F_NBjacobianRow.R R/F_NBpsiInfl.R R/F_NBrowInfl.R R/F_RCM.R R/F_RCM_NB.R R/F_addOrthProjection.R R/F_arrayProd.R R/F_buildCentMat.R R/F_buildConfMat.R R/F_buildCovMat.R R/F_buildDesign.R R/F_dLR_nb.R R/F_dNBabunds.R R/F_dNBlibSizes.R R/F_dNBllcol.R R/F_dNBllcol_constr.R R/F_dNBllcol_constr_noLab.R R/F_dNBllrow.R R/F_dNBpsis.R R/F_data.R R/F_ellipseCoord.R R/F_estDisp.R R/F_estNBparams.R R/F_estNBparamsNoLab.R R/F_estNPresp.R R/F_extractCoord.R R/F_extractDisp.R R/F_extractE.R R/F_filterConfounders.R R/F_getDevianceRes.R R/F_getInflCol.R R/F_getInflRow.R R/F_getInt.R R/F_getLogLik.R R/F_getRowMat.R R/F_heq_nb.R R/F_heq_nb_jac.R R/F_liks.R R/F_plot.RCM.R R/F_plotRespFun.R R/F_residualPlot.R R/F_respFunJacMat.R R/F_respFunScoreMat.R R/F_rowMultiply.R R/F_seq_k.R R/F_squarePlot.R R/F_trimOnConfounders.R README.md
README_figs/README-constrLinPlot-1.png
README_figs/README-constrLinPlot2-1.png
README_figs/README-inflAge-1.png
README_figs/README-inflAgeCol-1.png
README_figs/README-inflAgeFast2-1.png
README_figs/README-plotAddedDimension-1.png
README_figs/README-plotCond-1.png
README_figs/README-plotDevResp-1.png
README_figs/README-plotDevRuns-1.png
README_figs/README-plotLinVar-1.png
README_figs/README-plotNP3Biplot-1.png
README_figs/README-plotNPTriplot-1.png
README_figs/README-plotPearResp-1.png
README_figs/README-plotRichness-1.png
README_figs/README-plotUnconstrainedRCMall-1.png
README_figs/README-plotUnconstrainedRCMallColour-1.png
README_figs/README-plotUnconstrainedRCMhighlight-1.png
README_figs/README-plotUnconstrainedRCMsam-1.png
README_figs/README-plotUnconstrainedRCMsamCol-1.png
README_figs/README-plotUnconstrainedRCMsamColDev-1.png
README_figs/README-plotUnconstrainedRCMsamColShannon-1.png
README_figs/README-plotUnconstrainedRCMspec-1.png
README_figs/README-plotUnconstrainedRCMspec2-1.png
README_figs/README-plotUnconstrainedRCMtaxDev-1.png
README_figs/README-plotlin2cor-1.png
README_figs/README-plotlin2corVis-1.png
README_figs/README-plotlin3-1.png
README_figs/README-plotlin3Triplot-1.png
README_figs/README-plotlin3Vis-1.png
README_figs/README-plotnonParamCol-1.png
README_figs/README-plotnonParamRespFunFuso-1.png
README_figs/README-plotnonParamVar-1.png
data/Zeller.RData
man/JacCol_constr.Rd man/JacCol_constr_noLab.Rd man/LR_nb.Rd man/LR_nb_Jac.Rd man/NBalphaInfl.Rd man/NBcolInfl.Rd man/NBjacobianAbunds.Rd man/NBjacobianCol.Rd man/NBjacobianLibSizes.Rd man/NBjacobianPsi.Rd man/NBjacobianRow.Rd man/NBpsiInfl.Rd man/NBrowInfl.Rd man/RCM.Rd man/RCM_NB.Rd man/Zeller.Rd man/addOrthProjection.Rd man/arrayprod.Rd man/buildCentMat.Rd man/buildConfMat.Rd man/buildConfMat.character.Rd man/buildConfMat.data.frame.Rd man/buildConfMat.numeric.Rd man/buildCovMat.Rd man/buildDesign.Rd man/dLR_nb.Rd man/dNBabunds.Rd man/dNBlibSizes.Rd man/dNBllcol.Rd man/dNBllcol_constr.Rd man/dNBllcol_constr_noLab.Rd man/dNBllrow.Rd man/dNBpsis.Rd man/ellipseCoord.Rd man/estDisp.Rd man/estNBparams.Rd man/estNBparamsNoLab.Rd man/estNPresp.Rd man/extractCoord.Rd man/extractDisp.Rd man/extractE.Rd man/filterConfounders.Rd man/getDevianceRes.Rd man/getInflCol.Rd man/getInflRow.Rd man/getInt.Rd man/getLogLik.Rd man/getRowMat.Rd man/heq_nb.Rd man/heq_nb_jac.Rd man/liks.Rd man/plot.RCM.Rd man/plotRespFun.Rd man/residualPlot.Rd man/respFunJacMat.Rd man/respFunScoreMat.Rd man/rowMultiply.Rd man/seq_k.Rd man/squarePlot.Rd man/trimOnConfounders.Rd vignettes/RCMvignette.Rmd
CenterForStatistics-UGent/RCM documentation built on June 18, 2018, 1:09 a.m.