README.md
In CharlesJB/ProfilesMetagene: Demo of creation of genomic profiles with metagene
Building vignette
The easiest way to build the vignette for the moment is to launch R from main
directory of the ProfilesMetagene package. The R version should be R/R-3.1.1
From R:
library(packrat)
packrat::on()
knitr::knit2html("vignettes/get_profiles_metagene.Rmd")
Note
The bam files must be downloaded from ENCODE:
wget -O inst/extdata/H3K4me1.bam https://www.encodeproject.org/files/ENCFF000ARY/@@download/ENCFF000ARY.bam
wget -O inst/extdata/H3K27ac.bam https://www.encodeproject.org/files/ENCFF000ASG/@@download/ENCFF000ASG.bam
They should also be indexed with samtools.
CharlesJB/ProfilesMetagene documentation built on May 6, 2019, 9:58 a.m.
R Package Documentation
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Building vignette
The easiest way to build the vignette for the moment is to launch R from main
directory of the ProfilesMetagene package. The R version should be R/R-3.1.1
From R:
library(packrat)
packrat::on()
knitr::knit2html("vignettes/get_profiles_metagene.Rmd")
Note
The bam files must be downloaded from ENCODE:
wget -O inst/extdata/H3K4me1.bam https://www.encodeproject.org/files/ENCFF000ARY/@@download/ENCFF000ARY.bam
wget -O inst/extdata/H3K27ac.bam https://www.encodeproject.org/files/ENCFF000ASG/@@download/ENCFF000ASG.bam
They should also be indexed with samtools.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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