ChristophH/sctransform: Variance Stabilizing Transformations for Single Cell UMI Data

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for differential gene expression testing, batch correction, and data correction/denoising.

Getting started

Package details

Maintainer
LicenseGPL-3 | file LICENSE
Version0.0.0.900
URL https://github.com/ChristophH/sctransform
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("ChristophH/sctransform")
ChristophH/sctransform documentation built on March 20, 2019, 5:40 p.m.